miRNA display CGI


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GenBank Identifier RefSeq Acc. Name
9629378 NC_001806.1 Human herpesvirus 1

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ID strand start position length sRNA loop score core MFE. NP ORF Known viral miRNA Match to own genomic region# Target prediction with RNAhybrid
5960 - 118404 90 29 -31.1 5' arm      3' arm
5959 - 117150 89 19.5 -25.9 5' arm      3' arm
5979 - 131824 88 22 -30.2 5' arm      3' arm
5977 - 131252 89 21 -20.2 5' arm      3' arm
5981 - 132380 87 20 -27.6 5' arm      3' arm
5984 - 135086 88 19.5 -20.6 5' arm      3' arm
5577 + 26850 89 23 -28.7 5' arm      3' arm
5980 - 132044 88 24 -28.3 5' arm      3' arm
5990 - 137708 87 21.5 -21.6 5' arm      3' arm
5779 + 151782 88 24.5 -19.6 5' arm      3' arm
5970 - 125957 88 20 -28.72 5' arm      3' arm
5972 - 126801 88 23 -25.7 5' arm      3' arm
5951 - 113457 89 23 -29.5 5' arm      3' arm
5559 + 18070 90 23 -26.5 5' arm      3' arm
5964 - 120512 87 20 -30.5 5' arm      3' arm
5969 - 123493 88 25.5 -27.3 5' arm      3' arm
5963 - 120412 89 20 -23.7 5' arm      3' arm
5967 - 122556 90 20 -26 5' arm      3' arm
5978 - 131347 90 19 -22.4 5' arm      3' arm
5971 - 126451 88 24.5 -19.6 5' arm      3' arm
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# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.