miRNA display CGI


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GenBank Identifier RefSeq Acc. Name
9629378 NC_001806.1 Human herpesvirus 1

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ID strand start position length sRNA loop score core MFE. NP ORF Known viral miRNA Match to own genomic region# Target prediction with RNAhybrid
5719 + 114177 90 21.5 -20.2 NP_044657 5' arm      3' arm
5954 - 114880 90 19.5 -22.6 NP_044657 5' arm      3' arm
5720 + 114585 90 19.5 -26 NP_044657 5' arm      3' arm
5718 + 113067 90 22.5 -26.7 NP_044656 5' arm      3' arm
5950 - 112457 86 20 -23.5 NP_044656 5' arm      3' arm
5717 + 112497 89 22.5 -20 NP_044656 5' arm      3' arm
5716 + 111989 90 21 -25.5 NP_044655 5' arm      3' arm
5948 - 109487 89 23.5 -24.3 NP_044655 5' arm      3' arm
5714 + 109322 90 22.5 -28.4 NP_044655 5' arm      3' arm
5949 - 111955 86 19.5 -21.7 NP_044655 5' arm      3' arm
5715 + 109913 90 20.5 -27.5 NP_044655 5' arm      3' arm
5713 + 108706 90 20.5 -24.8 NP_044654 5' arm      3' arm
5947 - 108670 90 21.5 -24.1 NP_044654 5' arm      3' arm
5946 - 107721 90 19.5 -27.5 NP_044653 5' arm      3' arm
5711 + 107759 89 20.5 -21.8 NP_044653 5' arm      3' arm
5710 + 107126 87 20.5 -22.8 NP_044653 5' arm      3' arm
5712 + 107853 89 20 -23.8 NP_044653 5' arm      3' arm
5945 - 106965 87 22 -27 NP_044652 5' arm      3' arm
5944 - 106254 78 21 -28.1 NP_044651 5' arm      3' arm
5709 + 106130 88 21 -32.2 NP_044651 5' arm      3' arm
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# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.