miRNA display CGI


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GenBank Identifier RefSeq Acc. Name
9629378 NC_001806.1 Human herpesvirus 1

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ID strand start position length sRNA loop score core MFE. NP ORF Known viral miRNA Match to own genomic region# Target prediction with RNAhybrid
5559 + 18070 90 23 -26.5 5' arm      3' arm
5992 - 138258 89 23 -20.2 5' arm      3' arm
5731 + 122249 87 23 -33.4 NP_044601 5' arm      3' arm
5794 - 7506 89 23 -19.72 5' arm      3' arm
5577 + 26850 89 23 -28.7 5' arm      3' arm
5657 + 75626 89 23 -22.9 NP_044638 5' arm      3' arm
5586 + 31140 81 23 -31.7 NP_044617 5' arm      3' arm
5911 - 83630 90 23 -30.9 NP_044639 5' arm      3' arm
5817 - 24435 90 23 -22.7 NP_044611       
5933 - 97423 90 23 -29.5 NP_044646 5' arm      3' arm
5783 - 2577 89 23 -29.7 5' arm      3' arm
5788 - 4122 87 23 -33.4 NP_044601 5' arm      3' arm
5598 + 36591 90 23 -25.3 NP_044620 5' arm      3' arm
5902 - 79861 88 23 -32 NP_044638 5' arm      3' arm
5717 + 112497 89 22.5 -20 NP_044656 5' arm      3' arm
5714 + 109322 90 22.5 -28.4 NP_044655 5' arm      3' arm
5590 + 33432 89 22.5 -24.3 NP_044618 5' arm      3' arm
5677 + 85365 90 22.5 -25.6 NP_044640 5' arm      3' arm
5912 - 83941 88 22.5 -28.8 NP_044639 5' arm      3' arm
5643 + 64887 90 22.5 -22.2 NP_044632 5' arm      3' arm
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* Note: Click the field header to sort on a field. Click it again to reverse the sorted list.
# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.