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| GenBank Identifier | RefSeq Acc. | Name |
| 51557483 | NC_006151.1 | Suid herpesvirus 1 |
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| ID | strand | start position | length | sRNA loop score |
core MFE.
|
NP ORF | Known viral miRNA | Match to own genomic region# | Target prediction with RNAhybrid |
| 29589 | - | 70081 | 88 | 23 | -26 | YP_068356 | 5' arm 3' arm | ||
| 29594 | - | 79450 | 89 | 22.5 | -26 | YP_068363 | 5' arm 3' arm | ||
| 29516 | + | 138219 | 90 | 20 | -25.9 | YP_068394 | 5' arm 3' arm | ||
| 29625 | - | 106383 | 90 | 20 | -25.9 | YP_068381 | 5' arm 3' arm | ||
| 29507 | + | 121501 | 89 | 20 | -25.9 | YP_068387 | 5' arm 3' arm | ||
| 29578 | - | 66053 | 90 | 21.5 | -25.8 | YP_068354 | 5' arm 3' arm | ||
| 29618 | - | 97447 | 88 | 24.5 | -25.7 | YP_068379 | 5' arm 3' arm | ||
| 29439 | + | 59864 | 90 | 20.5 | -25.7 | YP_068352 | 5' arm 3' arm | ||
| 29525 | - | 4613 | 87 | 23 | -25.7 | YP_068321 | 5' arm 3' arm | ||
| 29592 | - | 73262 | 88 | 22 | -25.7 | YP_068359 | 5' arm 3' arm | ||
| 29412 | + | 34258 | 90 | 24 | -25.6 | YP_068339 | 5' arm 3' arm | ||
| 29436 | + | 55366 | 90 | 21 | -25.6 | YP_068347 | 5' arm 3' arm | ||
| 29393 | + | 20425 | 89 | 21.5 | -25.6 | YP_068331 | 5' arm 3' arm | ||
| 29493 | + | 100209 | 90 | 23 | -25.5 | 5' arm 3' arm | |||
| 29454 | + | 78647 | 81 | 22.5 | -25.5 | YP_068362 | 5' arm 3' arm | ||
| 29634 | - | 119921 | 85 | 19 | -25.42 | YP_068386 | 5' arm 3' arm | ||
| 29387 | + | 17935 | 89 | 19.5 | -25.4 | YP_068330 | 5' arm 3' arm | ||
| 29535 | - | 21628 | 90 | 20 | -25.4 | YP_068331 | 5' arm 3' arm | ||
| 29408 | + | 28919 | 87 | 19.5 | -25.3 | YP_068334 | 5' arm 3' arm | ||
| 29576 | - | 64916 | 89 | 19.5 | -25.3 | YP_068354 | 5' arm 3' arm |
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# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.
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