miRNA display CGI


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GenBank Identifier RefSeq Acc. Name
9626821 NC_001493.1 Ictalurid herpesvirus 1

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ID strand start position length sRNA loop score core MFE. NP ORF Known viral miRNA Match to own genomic region# Target prediction with RNAhybrid
2888 + 14272 89 22 -19.4 NP_041101 5' arm      3' arm
2889 + 14398 90 21.5 -22.2 NP_041179 5' arm      3' arm
2901 + 28756 80 21 -20.1 NP_041113 5' arm      3' arm
2899 + 28054 89 20.5 -26.3 NP_041113 5' arm      3' arm
2900 + 28187 81 19.5 -20.1 NP_041113 5' arm      3' arm
2905 + 31799 88 19.5 -25.6 NP_041114 5' arm      3' arm
2904 + 29719 89 19 -21.99 NP_041113 5' arm      3' arm
2907 + 35298 89 22 -28.9 NP_041118 5' arm      3' arm
2906 + 32590 90 21 -32.2 NP_041115 5' arm      3' arm
2908 + 36275 89 20.5 -20.6 NP_041119 5' arm      3' arm
2903 + 29630 89 21.5 -26.6 NP_041113 5' arm      3' arm
2902 + 29137 87 23 -19.7 NP_041113 5' arm      3' arm
2892 + 16039 89 20 -21.1 NP_041103 5' arm      3' arm
2894 + 18043 89 20 -27.3 NP_041105 5' arm      3' arm
2890 + 14666 81 19 -27.6 NP_041102 5' arm      3' arm
2893 + 17461 90 19 -31.2 NP_041105 5' arm      3' arm
2895 + 20581 87 21.5 -19.4 NP_041107 5' arm      3' arm
2897 + 20970 88 20.5 -20.2 NP_041107 5' arm      3' arm
2896 + 20759 88 19.5 -20.5 NP_041107 5' arm      3' arm
2898 + 23271 88 21.5 -28.7 NP_041108 5' arm      3' arm
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# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.