miRNA display CGI


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GenBank Identifier RefSeq Acc. Name
9626821 NC_001493.1 Ictalurid herpesvirus 1

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ID strand start position length sRNA loop score core MFE. NP ORF Known viral miRNA Match to own genomic region# Target prediction with RNAhybrid
2876 + 5870 90 21 -27.7 NP_041172 5' arm      3' arm
2875 + 5728 89 21.5 -19.5 NP_041094 5' arm      3' arm
2880 + 9289 90 23.5 -24.3 NP_041174 5' arm      3' arm
2872 + 4238 88 19 -32.1 NP_041171 5' arm      3' arm
2871 + 2943 90 19 -20.7 NP_041170 5' arm      3' arm
2885 + 11292 89 20.5 -20.1 5' arm      3' arm
2882 + 9698 90 20 -22 NP_041175 5' arm      3' arm
2898 + 23271 88 21.5 -28.7 NP_041108 5' arm      3' arm
2896 + 20759 88 19.5 -20.5 NP_041107 5' arm      3' arm
2897 + 20970 88 20.5 -20.2 NP_041107 5' arm      3' arm
2895 + 20581 87 21.5 -19.4 NP_041107 5' arm      3' arm
2893 + 17461 90 19 -31.2 NP_041105 5' arm      3' arm
2890 + 14666 81 19 -27.6 NP_041102 5' arm      3' arm
2894 + 18043 89 20 -27.3 NP_041105 5' arm      3' arm
2892 + 16039 89 20 -21.1 NP_041103 5' arm      3' arm
2889 + 14398 90 21.5 -22.2 NP_041179 5' arm      3' arm
2888 + 14272 89 22 -19.4 NP_041101 5' arm      3' arm
2887 + 14092 85 22 -25.1 NP_041101 5' arm      3' arm
2891 + 15123 88 22.5 -26.5 NP_041180 5' arm      3' arm
2883 + 10427 88 20 -21.2 5' arm      3' arm
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* Note: Click the field header to sort on a field. Click it again to reverse the sorted list.
# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.