miRNA display CGI


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GenBank Identifier RefSeq Acc. Name
9626821 NC_001493.1 Ictalurid herpesvirus 1

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ID strand start position length sRNA loop score core MFE. NP ORF Known viral miRNA Match to own genomic region# Target prediction with RNAhybrid
3004 + 121540 90 21 -27.7 NP_041094 5' arm      3' arm
3041 - 21058 90 19.5 -27.7 NP_041107 5' arm      3' arm
3132 - 124722 86 20 -27.7 NP_041096 5' arm      3' arm
3107 - 97329 89 22 -27.6 NP_041160 5' arm      3' arm
2890 + 14666 81 19 -27.6 NP_041102 5' arm      3' arm
3018 + 130336 81 19 -27.6 NP_041180 5' arm      3' arm
3014 + 128678 89 22 -27.5 NP_041099 5' arm      3' arm
3110 - 100369 87 21 -27.5 NP_041162 5' arm      3' arm
2886 + 13008 89 22 -27.5 NP_041099 5' arm      3' arm
3045 - 27028 90 23 -27.5 5' arm      3' arm
2961 + 85012 89 22.5 -27.4 NP_041156 5' arm      3' arm
3043 - 24294 89 20.5 -27.3 NP_041109 5' arm      3' arm
3022 + 133713 89 20 -27.3 NP_041183 5' arm      3' arm
2894 + 18043 89 20 -27.3 NP_041105 5' arm      3' arm
2946 + 67745 81 21 -27.2 NP_041145 5' arm      3' arm
3102 - 93414 90 19 -27.2 NP_041159 5' arm      3' arm
3105 - 95061 89 20.5 -26.9 NP_041159 5' arm      3' arm
2903 + 29630 89 21.5 -26.6 NP_041113 5' arm      3' arm
3091 - 79101 90 21 -26.6 NP_041150 5' arm      3' arm
2983 + 100382 90 20 -26.6 NP_041162 5' arm      3' arm
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* Note: Click the field header to sort on a field. Click it again to reverse the sorted list.
# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.