miRNA display CGI


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GenBank Identifier RefSeq Acc. Name
9626821 NC_001493.1 Ictalurid herpesvirus 1

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ID strand start position length sRNA loop score core MFE. NP ORF Known viral miRNA Match to own genomic region# Target prediction with RNAhybrid
3129 - 124153 88 19.5 -30.3 NP_041095 5' arm      3' arm
3030 - 8483 88 19.5 -30.3 NP_041095 5' arm      3' arm
3122 - 117571 86 20.5 -30.3 NP_041170 5' arm      3' arm
3111 - 101930 90 21 -30 NP_041162 5' arm      3' arm
2985 + 101920 88 20 -29.9 NP_041162 5' arm      3' arm
3056 - 40144 89 23 -29.9 NP_041124 5' arm      3' arm
2990 + 107606 90 21.5 -29.8 NP_041163 5' arm      3' arm
3120 - 113455 89 21.5 -29.6 NP_041168 5' arm      3' arm
2963 + 87061 90 22 -29.5 NP_041157 5' arm      3' arm
3058 - 42204 89 21 -29.4 NP_041126 5' arm      3' arm
2907 + 35298 89 22 -28.9 NP_041118 5' arm      3' arm
2977 + 97141 86 23.5 -28.9 NP_041160 5' arm      3' arm
2964 + 87663 86 21.5 -28.7 NP_041157 5' arm      3' arm
2898 + 23271 88 21.5 -28.7 NP_041108 5' arm      3' arm
3007 + 124867 90 19 -28.4 NP_041174 5' arm      3' arm
2879 + 9197 90 19 -28.4 NP_041096 5' arm      3' arm
3098 - 88960 87 19.5 -28 NP_041157 5' arm      3' arm
3076 - 57772 85 22 -27.8 NP_041137 5' arm      3' arm
2876 + 5870 90 21 -27.7 NP_041172 5' arm      3' arm
3041 - 21058 90 19.5 -27.7 NP_041107 5' arm      3' arm
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* Note: Click the field header to sort on a field. Click it again to reverse the sorted list.
# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.