miRNA display CGI


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GenBank Identifier RefSeq Acc. Name
9626821 NC_001493.1 Ictalurid herpesvirus 1

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ID strand start position length sRNA loop score core MFE. NP ORF Known viral miRNA Match to own genomic region# Target prediction with RNAhybrid
2885 + 11292 89 20.5 -20.1 5' arm      3' arm
2901 + 28756 80 21 -20.1 NP_041113 5' arm      3' arm
2900 + 28187 81 19.5 -20.1 NP_041113 5' arm      3' arm
3013 + 126962 89 20.5 -20.1 5' arm      3' arm
3006 + 124637 86 19 -20.1 NP_041096 5' arm      3' arm
2878 + 8967 86 19 -20.1 NP_041174 5' arm      3' arm
2897 + 20970 88 20.5 -20.2 NP_041107 5' arm      3' arm
3113 - 103120 90 23.5 -20.3 NP_041162 5' arm      3' arm
3001 + 120761 89 20 -20.3 NP_041094 5' arm      3' arm
2972 + 92489 84 21.5 -20.3 NP_041159 5' arm      3' arm
3063 - 45156 86 21 -20.3 NP_041129 5' arm      3' arm
2947 + 67877 90 20 -20.3 NP_041145 5' arm      3' arm
2873 + 5091 89 20 -20.3 NP_041172 5' arm      3' arm
3048 - 28594 90 19 -20.4 NP_041113 5' arm      3' arm
3051 - 30829 89 19 -20.4 NP_041113 5' arm      3' arm
2956 + 79920 90 21 -20.5 NP_041151 5' arm      3' arm
3072 - 50034 89 20.5 -20.5 NP_041132 5' arm      3' arm
3133 - 126920 87 20 -20.5 NP_041176 5' arm      3' arm
3034 - 11250 87 20 -20.5 NP_041098 5' arm      3' arm
2896 + 20759 88 19.5 -20.5 NP_041107 5' arm      3' arm
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* Note: Click the field header to sort on a field. Click it again to reverse the sorted list.
# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.