miRNA display CGI


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GenBank Identifier RefSeq Acc. Name
9626821 NC_001493.1 Ictalurid herpesvirus 1

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ID strand start position length sRNA loop score core MFE. NP ORF Known viral miRNA Match to own genomic region# Target prediction with RNAhybrid
2895 + 20581 87 21.5 -19.4 NP_041107 5' arm      3' arm
2888 + 14272 89 22 -19.4 NP_041101 5' arm      3' arm
3085 - 68293 90 25 -19.4 NP_041145 5' arm      3' arm
3016 + 129942 89 22 -19.4 NP_041101 5' arm      3' arm
2875 + 5728 89 21.5 -19.5 NP_041094 5' arm      3' arm
3003 + 121398 89 21.5 -19.5 NP_041172 5' arm      3' arm
3064 - 45639 89 20 -19.52 NP_041130 5' arm      3' arm
3131 - 124550 88 20 -19.6 NP_041096 5' arm      3' arm
2987 + 105668 90 21 -19.6 NP_041163 5' arm      3' arm
3032 - 8880 88 20 -19.6 NP_041174 5' arm      3' arm
3119 - 111998 89 19 -19.6 NP_041166 5' arm      3' arm
2949 + 70354 86 21.5 -19.6 NP_041147 5' arm      3' arm
2921 + 47496 86 21 -19.6 NP_041130 5' arm      3' arm
3065 - 46410 90 19.5 -19.7 NP_041130 5' arm      3' arm
2902 + 29137 87 23 -19.7 NP_041113 5' arm      3' arm
2993 + 109928 90 20 -19.7 NP_041164 5' arm      3' arm
3137 - 131017 85 21.5 -20 NP_041180 5' arm      3' arm
2928 + 59203 90 23 -20 NP_041137 5' arm      3' arm
2915 + 42201 90 24 -20 NP_041126 5' arm      3' arm
3039 - 15347 85 21.5 -20 NP_041102 5' arm      3' arm
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* Note: Click the field header to sort on a field. Click it again to reverse the sorted list.
# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.