miRNA display CGI


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GenBank Identifier RefSeq Acc. Name
9626821 NC_001493.1 Ictalurid herpesvirus 1

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ID strand start position length sRNA loop score core MFE. NP ORF Known viral miRNA Match to own genomic region# Target prediction with RNAhybrid
2981 + 99612 90 19 -24.3 5' arm      3' arm
2992 + 109248 89 19 -21.1 NP_041164 5' arm      3' arm
2958 + 82903 90 19 -23.5 NP_041155 5' arm      3' arm
2965 + 87924 90 19 -23.4 NP_041157 5' arm      3' arm
2917 + 43885 90 19 -22.3 NP_041128 5' arm      3' arm
2920 + 46822 90 19 -21.8 NP_041130 5' arm      3' arm
2932 + 61317 89 19 -30.4 NP_041139 5' arm      3' arm
2893 + 17461 90 19 -31.2 NP_041105 5' arm      3' arm
2962 + 85572 89 19 -21.2 NP_041156 5' arm      3' arm
2879 + 9197 90 19 -28.4 NP_041096 5' arm      3' arm
2878 + 8967 86 19 -20.1 NP_041174 5' arm      3' arm
2871 + 2943 90 19 -20.7 NP_041170 5' arm      3' arm
2872 + 4238 88 19 -32.1 NP_041171 5' arm      3' arm
2890 + 14666 81 19 -27.6 NP_041102 5' arm      3' arm
2904 + 29719 89 19 -21.99 NP_041113 5' arm      3' arm
2991 + 108873 89 19 -24.5 NP_041164 5' arm      3' arm
2911 + 39359 89 19 -24.9 NP_041123 5' arm      3' arm
2948 + 69602 87 19 -22.4 NP_041146 5' arm      3' arm
2973 + 93726 89 19 -22.9 NP_041159 5' arm      3' arm
2975 + 95903 89 19 -20.7 NP_041159 5' arm      3' arm
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* Note: Click the field header to sort on a field. Click it again to reverse the sorted list.
# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.