miRNA display CGI


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GenBank Identifier RefSeq Acc. Name
9626821 NC_001493.1 Ictalurid herpesvirus 1

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ID strand start position length sRNA loop score core MFE. NP ORF Known viral miRNA Match to own genomic region# Target prediction with RNAhybrid
2940 + 63876 90 31.5 -32.9 NP_041141 5' arm      3' arm
2938 + 63638 87 28 -22.6 NP_041141 5' arm      3' arm
3012 + 126203 89 27 -20.8 5' arm      3' arm
2884 + 10533 89 27 -20.8 5' arm      3' arm
2936 + 63389 87 26.5 -22.3 NP_041141 5' arm      3' arm
2939 + 63748 89 26 -33.2 NP_041141 5' arm      3' arm
2935 + 63006 89 26 -33.7 NP_041141 5' arm      3' arm
3009 + 125255 85 25.5 -30.5 NP_041097 5' arm      3' arm
2937 + 63507 90 25.5 -24.2 NP_041141 5' arm      3' arm
2881 + 9585 85 25.5 -30.5 NP_041175 5' arm      3' arm
3085 - 68293 90 25 -19.4 NP_041145 5' arm      3' arm
3082 - 60614 89 24 -22.3 NP_041138 5' arm      3' arm
2915 + 42201 90 24 -20 NP_041126 5' arm      3' arm
3083 - 61404 88 24 -34.1 NP_041139 5' arm      3' arm
2977 + 97141 86 23.5 -28.9 NP_041160 5' arm      3' arm
2880 + 9289 90 23.5 -24.3 NP_041174 5' arm      3' arm
2919 + 45937 90 23.5 -22.9 NP_041130 5' arm      3' arm
3008 + 124959 90 23.5 -24.3 NP_041174 5' arm      3' arm
3113 - 103120 90 23.5 -20.3 NP_041162 5' arm      3' arm
2971 + 90895 88 23 -25.8 NP_041158 5' arm      3' arm
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* Note: Click the field header to sort on a field. Click it again to reverse the sorted list.
# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.