miRNA display CGI


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GenBank Identifier RefSeq Acc. Name
9626821 NC_001493.1 Ictalurid herpesvirus 1

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ID strand start position length sRNA loop score core MFE. NP ORF Known viral miRNA Match to own genomic region# Target prediction with RNAhybrid
2928 + 59203 90 23 -20 NP_041137 5' arm      3' arm
2941 + 63968 90 23 -21.6 NP_041141 5' arm      3' arm
3100 - 91518 90 23 -24.7 NP_041158 5' arm      3' arm
2926 + 57190 88 23 -25.1 NP_041137 5' arm      3' arm
2982 + 100283 89 23 -22.9 NP_041162 5' arm      3' arm
2971 + 90895 88 23 -25.8 NP_041158 5' arm      3' arm
3045 - 27028 90 23 -27.5 5' arm      3' arm
3056 - 40144 89 23 -29.9 NP_041124 5' arm      3' arm
2913 + 41494 90 22.5 -20.7 NP_041125 5' arm      3' arm
2988 + 106424 90 22.5 -22.9 NP_041163 5' arm      3' arm
3118 - 111049 89 22.5 -22.9 NP_041165 5' arm      3' arm
3079 - 58787 89 22.5 -34.6 NP_041137 5' arm      3' arm
3078 - 58554 81 22.5 -24.1 NP_041137 5' arm      3' arm
3088 - 69851 89 22.5 -25.4 NP_041146 5' arm      3' arm
3060 - 42843 85 22.5 -21.8 NP_041127 5' arm      3' arm
2961 + 85012 89 22.5 -27.4 NP_041156 5' arm      3' arm
2951 + 72523 90 22.5 -21.1 NP_041147 5' arm      3' arm
3019 + 130793 88 22.5 -26.5 NP_041180 5' arm      3' arm
2891 + 15123 88 22.5 -26.5 NP_041180 5' arm      3' arm
2995 + 113750 90 22.5 -21.1 NP_041168 5' arm      3' arm
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* Note: Click the field header to sort on a field. Click it again to reverse the sorted list.
# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.