miRNA display CGI

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ID	strand	start position	length	sRNA loop score	core MFE.	NP ORF	Known viral miRNA	Match to own genomic region#	Target prediction with RNAhybrid
3035	-	13206	89	21.5	-26.2			5' arm      3' arm
3013	+	126962	89	20.5	-20.1			5' arm      3' arm
3045	-	27028	90	23	-27.5			5' arm      3' arm
3023	-	1901	86	20.5	-30.3	NP_041092		5' arm      3' arm
2999	+	118613	90	19	-20.7	NP_041092		5' arm      3' arm
2998	+	116510	90	21	-22.62	NP_041092		5' arm      3' arm
3004	+	121540	90	21	-27.7	NP_041094		5' arm      3' arm
3001	+	120761	89	20	-20.3	NP_041094		5' arm      3' arm
2875	+	5728	89	21.5	-19.5	NP_041094		5' arm      3' arm
2874	+	5191	90	19.5	-23.9	NP_041094		5' arm      3' arm
3125	-	121431	90	22.5	-31.9	NP_041094		5' arm      3' arm
3026	-	5761	90	22.5	-31.9	NP_041094		5' arm      3' arm
3124	-	120727	85	21	-22	NP_041094		5' arm      3' arm
3126	-	121629	89	21.5	-24.8	NP_041094		5' arm      3' arm
3129	-	124153	88	19.5	-30.3	NP_041095		5' arm      3' arm
3030	-	8483	88	19.5	-30.3	NP_041095		5' arm      3' arm
3006	+	124637	86	19	-20.1	NP_041096		5' arm      3' arm
3033	-	9052	86	20	-27.7	NP_041096		5' arm      3' arm
2879	+	9197	90	19	-28.4	NP_041096		5' arm      3' arm
3132	-	124722	86	20	-27.7	NP_041096		5' arm      3' arm

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* Note: Click the field header to sort on a field. Click it again to reverse the sorted list.
# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.

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