miRNA display CGI


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GenBank Identifier RefSeq Acc. Name
9626821 NC_001493.1 Ictalurid herpesvirus 1

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ID strand start position length sRNA loop score core MFE. NP ORF Known viral miRNA Match to own genomic region# Target prediction with RNAhybrid
3025 - 5057 85 21 -22 NP_041172 5' arm      3' arm
3003 + 121398 89 21.5 -19.5 NP_041172 5' arm      3' arm
2876 + 5870 90 21 -27.7 NP_041172 5' arm      3' arm
3027 - 5959 89 21.5 -24.8 NP_041172 5' arm      3' arm
2873 + 5091 89 20 -20.3 NP_041172 5' arm      3' arm
3000 + 119908 88 19 -32.1 NP_041171 5' arm      3' arm
2872 + 4238 88 19 -32.1 NP_041171 5' arm      3' arm
3024 - 4199 86 19 -21.2 NP_041171 5' arm      3' arm
3123 - 119869 86 19 -21.2 NP_041171 5' arm      3' arm
2870 + 840 90 21 -22.62 NP_041170 5' arm      3' arm
3122 - 117571 86 20.5 -30.3 NP_041170 5' arm      3' arm
2871 + 2943 90 19 -20.7 NP_041170 5' arm      3' arm
2997 + 114796 87 20.5 -21.8 NP_041169 5' arm      3' arm
3120 - 113455 89 21.5 -29.6 NP_041168 5' arm      3' arm
2995 + 113750 90 22.5 -21.1 NP_041168 5' arm      3' arm
2996 + 114120 89 20 -25 NP_041168 5' arm      3' arm
3119 - 111998 89 19 -19.6 NP_041166 5' arm      3' arm
2994 + 112136 90 21.5 -25.3 NP_041166 5' arm      3' arm
3117 - 110796 89 20 -23 NP_041165 5' arm      3' arm
3118 - 111049 89 22.5 -22.9 NP_041165 5' arm      3' arm
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* Note: Click the field header to sort on a field. Click it again to reverse the sorted list.
# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.