miRNA display CGI


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GenBank Identifier RefSeq Acc. Name
9626821 NC_001493.1 Ictalurid herpesvirus 1

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ID strand start position length sRNA loop score core MFE. NP ORF Known viral miRNA Match to own genomic region# Target prediction with RNAhybrid
3021 + 133131 90 19 -31.2 NP_041183 5' arm      3' arm
3022 + 133713 89 20 -27.3 NP_041183 5' arm      3' arm
3137 - 131017 85 21.5 -20 NP_041180 5' arm      3' arm
3038 - 15168 90 21 -24.3 NP_041180 5' arm      3' arm
3018 + 130336 81 19 -27.6 NP_041180 5' arm      3' arm
2891 + 15123 88 22.5 -26.5 NP_041180 5' arm      3' arm
3019 + 130793 88 22.5 -26.5 NP_041180 5' arm      3' arm
3015 + 129762 85 22 -25.1 NP_041179 5' arm      3' arm
2889 + 14398 90 21.5 -22.2 NP_041179 5' arm      3' arm
3036 - 13616 87 19 -23.1 NP_041178 5' arm      3' arm
3133 - 126920 87 20 -20.5 NP_041176 5' arm      3' arm
3010 + 125368 90 20 -22 NP_041175 5' arm      3' arm
2882 + 9698 90 20 -22 NP_041175 5' arm      3' arm
2881 + 9585 85 25.5 -30.5 NP_041175 5' arm      3' arm
3007 + 124867 90 19 -28.4 NP_041174 5' arm      3' arm
3032 - 8880 88 20 -19.6 NP_041174 5' arm      3' arm
3008 + 124959 90 23.5 -24.3 NP_041174 5' arm      3' arm
2880 + 9289 90 23.5 -24.3 NP_041174 5' arm      3' arm
2878 + 8967 86 19 -20.1 NP_041174 5' arm      3' arm
3003 + 121398 89 21.5 -19.5 NP_041172 5' arm      3' arm
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# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.