miRNA display CGI


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GenBank Identifier RefSeq Acc. Name
29566975 NC_004689.1 Mycobacteriophage Barnyard virion

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ID strand start position length sRNA loop score core MFE. NP ORF Known viral miRNA Match to own genomic region# Target prediction with RNAhybrid
20770 + 16500 75 20 -24 NP_818568 5' arm      3' arm
20884 - 41226 82 20 -20.2 NP_818594 5' arm      3' arm
20912 - 64278 86 20 -19.9 NP_818635 5' arm      3' arm
20818 + 53771 88 20 -24.4 NP_818615 5' arm      3' arm
20764 + 8007 89 20 -21.5 NP_818553 5' arm      3' arm
20854 - 15360 89 20 -19.5 NP_818565 5' arm      
20761 + 4561 89 20 -21.5 NP_818545 5' arm      3' arm
20890 - 43901 88 20 -19.5 5' arm      3' arm
20831 + 65525 89 20 -25.4 NP_818639 5' arm      3' arm
20919 - 69841 90 20 -19.5 NP_818646 5' arm      
20787 + 24586 89 20 -20.8 NP_818572 5' arm      3' arm
20786 + 23763 90 20 -23.6 NP_818571 5' arm      3' arm
20829 + 63846 90 20 -22.1 NP_818634 5' arm      3' arm
20917 - 68834 90 20 -20.7 NP_818646 5' arm      3' arm
20857 - 16159 82 20 -30.4 NP_818567 5' arm      3' arm
20775 + 19468 90 20 -27.4 NP_818571 5' arm      3' arm
20859 - 16928 87 20 -24.5 NP_818568 5' arm      3' arm
20901 - 53121 90 20 -22.9 NP_818614 5' arm      3' arm
20833 + 68474 90 20 -27 NP_818646 5' arm      3' arm
20872 - 33905 85 20 -21.2 NP_818580 5' arm      3' arm
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* Note: Click the field header to sort on a field. Click it again to reverse the sorted list.
# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.