miRNA display CGI


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GenBank Identifier RefSeq Acc. Name
29566975 NC_004689.1 Mycobacteriophage Barnyard virion

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ID strand start position length sRNA loop score core MFE. NP ORF Known viral miRNA Match to own genomic region# Target prediction with RNAhybrid
20873 - 36065 85 19.5 -21 NP_818584 5' arm      3' arm
20892 - 46444 90 19.5 -20.4 NP_818603 5' arm      3' arm
20791 + 30176 86 19.5 -22.7 NP_818575 5' arm      3' arm
20793 + 31523 88 19.5 -20.7 NP_818577 5' arm      3' arm
20794 + 31665 87 19.5 -26 NP_818577 5' arm      3' arm
20815 + 43690 89 19.5 -20.2 5' arm      3' arm
20916 - 68087 90 19.5 -26 NP_818646 5' arm      3' arm
20813 + 41066 88 19.5 -24.6 NP_818594 5' arm      3' arm
20897 - 51024 87 19.5 -23.5 NP_818611 5' arm      
20808 + 38859 80 19.5 -24.9 NP_818589 5' arm      3' arm
20814 + 42951 74 19.5 -36.2 NP_818598 5' arm      3' arm
20773 + 18325 90 19.5 -22.8 NP_818571 5' arm      3' arm
20772 + 17555 77 19.5 -25.5 NP_818569 5' arm      3' arm
20771 + 17352 89 19.5 -22.4 NP_818569 5' arm      3' arm
20817 + 50429 85 19.5 -22 NP_818610 5' arm      3' arm
20766 + 12060 90 19.5 -24.4 NP_818559 5' arm      3' arm
20781 + 20759 88 19.5 -24.1 NP_818571 5' arm      3' arm
20905 - 54770 90 19.5 -25.6 NP_818617 5' arm      3' arm
20908 - 59866 88 19.5 -22.3 NP_818622 5' arm      3' arm
20787 + 24586 89 20 -20.8 NP_818572 5' arm      3' arm
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* Note: Click the field header to sort on a field. Click it again to reverse the sorted list.
# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.