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| GenBank Identifier | RefSeq Acc. | Name |
| 29566975 | NC_004689.1 | Mycobacteriophage Barnyard virion |
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| ID | strand | start position | length | sRNA loop score |
core MFE.
|
NP ORF | Known viral miRNA | Match to own genomic region# | Target prediction with RNAhybrid |
| 20860 | - | 17031 | 89 | 25.5 | -28.2 | NP_818568 | 5' arm 3' arm | ||
| 20847 | - | 12668 | 87 | 21.5 | -27.8 | NP_818559 | 5' arm 3' arm | ||
| 20801 | + | 36770 | 90 | 21.5 | -27.6 | 5' arm 3' arm | |||
| 20858 | - | 16638 | 90 | 19 | -27.6 | NP_818568 | 5' arm 3' arm | ||
| 20867 | - | 28641 | 89 | 21.5 | -27.5 | NP_818574 | 5' arm 3' arm | ||
| 20775 | + | 19468 | 90 | 20 | -27.4 | NP_818571 | 5' arm 3' arm | ||
| 20783 | + | 22212 | 83 | 24 | -27.4 | NP_818571 | 5' arm 3' arm | ||
| 20802 | + | 36920 | 86 | 19 | -27.3 | NP_818586 | 5' arm 3' arm | ||
| 20842 | - | 11614 | 87 | 21 | -27.2 | NP_818558 | 5' arm 3' arm | ||
| 20833 | + | 68474 | 90 | 20 | -27 | NP_818646 | 5' arm 3' arm | ||
| 20765 | + | 11831 | 90 | 21 | -27 | NP_818559 | 5' arm 3' arm | ||
| 20840 | - | 10440 | 86 | 21 | -26.9 | NP_818557 | 5' arm 3' arm | ||
| 20799 | + | 35062 | 87 | 20.5 | -26.6 | NP_818583 | 5' arm 3' arm | ||
| 20870 | - | 31071 | 90 | 21 | -26.6 | NP_818576 | 5' arm 3' arm | ||
| 20807 | + | 38133 | 90 | 21 | -26.5 | NP_818588 | 5' arm 3' arm | ||
| 20779 | + | 20424 | 87 | 19 | -26.5 | NP_818571 | 5' arm 3' arm | ||
| 20898 | - | 51496 | 89 | 22.5 | -26.3 | NP_818612 | 5' arm 3' arm | ||
| 20875 | - | 36485 | 90 | 22 | -26.3 | NP_818585 | 5' arm 3' arm | ||
| 20899 | - | 51903 | 87 | 22.5 | -26.1 | NP_818613 | 5' arm 3' arm | ||
| 20851 | - | 13475 | 90 | 21 | -26.1 | NP_818560 | 5' arm 3' arm |
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# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.
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