miRNA display CGI


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GenBank Identifier RefSeq Acc. Name
29566975 NC_004689.1 Mycobacteriophage Barnyard virion

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ID strand start position length sRNA loop score core MFE. NP ORF Known viral miRNA Match to own genomic region# Target prediction with RNAhybrid
20760 + 2165 87 19 -23.6 NP_818542 5' arm      3' arm
20836 - 4379 89 19 -20.3 NP_818544 5' arm      3' arm
20762 + 5915 90 21 -21.21 NP_818545 5' arm      3' arm
20761 + 4561 89 20 -21.5 NP_818545 5' arm      3' arm
20763 + 6715 89 23 -21.4 NP_818549 5' arm      3' arm
20764 + 8007 89 20 -21.5 NP_818553 5' arm      3' arm
20837 - 7959 89 21 -22.6 NP_818553 5' arm      3' arm
20838 - 8171 90 21 -19.4 NP_818553 5' arm      3' arm
20839 - 8874 90 22 -20.2 NP_818554 5' arm      
20840 - 10440 86 21 -26.9 NP_818557 5' arm      3' arm
20841 - 11128 90 24.5 -31.4 NP_818557       3' arm
20843 - 11705 89 19 -23.3 NP_818558 5' arm      3' arm
20842 - 11614 87 21 -27.2 NP_818558 5' arm      3' arm
20765 + 11831 90 21 -27 NP_818559 5' arm      3' arm
20844 - 11975 90 22.5 -22.8 NP_818559 5' arm      
20845 - 12189 89 21.5 -25.7 NP_818559 5' arm      3' arm
20850 - 13020 85 22 -29.9 NP_818559 5' arm      
20847 - 12668 87 21.5 -27.8 NP_818559 5' arm      3' arm
20846 - 12442 88 22.5 -22.1 NP_818559 5' arm      3' arm
20849 - 12916 85 21 -24.9 NP_818559 5' arm      3' arm
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* Note: Click the field header to sort on a field. Click it again to reverse the sorted list.
# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.