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| GenBank Identifier | RefSeq Acc. | Name |
| 41057437 | NC_005337.1 | Bovine papular stomatitis virus |
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| ID | strand | start position | length |
sRNA loop score
|
core MFE. | NP ORF | Known viral miRNA | Match to own genomic region# | Target prediction with RNAhybrid |
| 25946 | - | 121634 | 88 | 19.5 | -22.3 | NP_958031 | 5' arm 3' arm | ||
| 25934 | - | 114982 | 90 | 19.5 | -26.1 | NP_958023 | 5' arm 3' arm | ||
| 25583 | + | 41330 | 90 | 19.5 | -23.7 | NP_957946 | 5' arm 3' arm | ||
| 25533 | + | 18128 | 89 | 19.5 | -22.3 | NP_957928 | 5' arm 3' arm | ||
| 25515 | + | 8380 | 90 | 19.5 | -21.2 | NP_957918 | 5' arm 3' arm | ||
| 25644 | + | 79876 | 90 | 19.5 | -22.4 | NP_957984 | 5' arm 3' arm | ||
| 25700 | + | 109901 | 90 | 19.5 | -25.4 | NP_958015 | 5' arm 3' arm | ||
| 25531 | + | 16306 | 90 | 19.5 | -22.1 | NP_957926 | 5' arm 3' arm | ||
| 25530 | + | 15701 | 84 | 19.5 | -28.9 | NP_957925 | 5' arm 3' arm | ||
| 25529 | + | 15560 | 84 | 19.5 | -21.6 | NP_957925 | 5' arm 3' arm | ||
| 25626 | + | 71497 | 90 | 19.5 | -20.2 | NP_957977 | 5' arm 3' arm | ||
| 25915 | - | 99490 | 89 | 19.5 | -19.7 | NP_958007 | 5' arm 3' arm | ||
| 25930 | - | 110260 | 86 | 19.5 | -32 | NP_958015 | 5' arm 3' arm | ||
| 25551 | + | 26450 | 87 | 19.5 | -26.8 | NP_957934 | 5' arm 3' arm | ||
| 25912 | - | 97866 | 89 | 19.5 | -21.1 | NP_958004 | 5' arm 3' arm | ||
| 25518 | + | 10179 | 89 | 19.5 | -21.9 | NP_957919 | 5' arm 3' arm | ||
| 25620 | + | 65587 | 89 | 19.5 | -23.6 | NP_957973 | 5' arm 3' arm | ||
| 25544 | + | 22530 | 89 | 19.5 | -25.3 | NP_957931 | 5' arm 3' arm | ||
| 25931 | - | 110892 | 86 | 19.5 | -23.1 | NP_958017 | 5' arm 3' arm | ||
| 25615 | + | 63442 | 90 | 19.5 | -22.4 | NP_957970 | 5' arm 3' arm |
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# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.
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