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| GenBank Identifier | RefSeq Acc. | Name |
| 41057437 | NC_005337.1 | Bovine papular stomatitis virus |
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ID
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strand | start position | length | sRNA loop score | core MFE. | NP ORF | Known viral miRNA | Match to own genomic region# | Target prediction with RNAhybrid |
| 25563 | + | 33459 | 82 | 20.5 | -19.4 | NP_957939 | 5' arm 3' arm | ||
| 25564 | + | 33545 | 86 | 20.5 | -20.1 | NP_957939 | 5' arm 3' arm | ||
| 25565 | + | 34175 | 88 | 21 | -22.3 | NP_957939 | 5' arm 3' arm | ||
| 25566 | + | 34764 | 89 | 22 | -27.2 | NP_957941 | 5' arm 3' arm | ||
| 25567 | + | 35086 | 88 | 21.5 | -22.4 | NP_957941 | 5' arm 3' arm | ||
| 25568 | + | 35211 | 83 | 25.5 | -30.7 | NP_957941 | 5' arm 3' arm | ||
| 25569 | + | 35323 | 89 | 20 | -27 | NP_957941 | 5' arm 3' arm | ||
| 25570 | + | 35776 | 90 | 21 | -22.1 | NP_957943 | 5' arm 3' arm | ||
| 25571 | + | 36110 | 88 | 20.5 | -28.3 | NP_957943 | 5' arm 3' arm | ||
| 25572 | + | 36226 | 90 | 20 | -24.1 | NP_957943 | 5' arm 3' arm | ||
| 25573 | + | 36680 | 89 | 19 | -19.8 | NP_957943 | 5' arm 3' arm | ||
| 25574 | + | 37003 | 89 | 19.5 | -28.5 | NP_957944 | 5' arm 3' arm | ||
| 25575 | + | 37472 | 87 | 20 | -19.9 | NP_957944 | 5' arm 3' arm | ||
| 25576 | + | 37682 | 90 | 20 | -26.6 | NP_957944 | 5' arm 3' arm | ||
| 25577 | + | 39441 | 90 | 20 | -19.52 | NP_957945 | 5' arm 3' arm | ||
| 25578 | + | 39619 | 88 | 21 | -23 | NP_957945 | 5' arm 3' arm | ||
| 25579 | + | 39947 | 90 | 23 | -33.3 | NP_957945 | 5' arm 3' arm | ||
| 25580 | + | 40086 | 90 | 21 | -19.6 | NP_957945 | 5' arm 3' arm | ||
| 25581 | + | 40583 | 89 | 22.5 | -19.9 | NP_957946 | 5' arm 3' arm | ||
| 25582 | + | 40761 | 87 | 21 | -22.1 | NP_957946 | 5' arm 3' arm |
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# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.
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