miRNA display CGI


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GenBank Identifier RefSeq Acc. Name
41057437 NC_005337.1 Bovine papular stomatitis virus

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ID strand start position length sRNA loop score core MFE. NP ORF Known viral miRNA Match to own genomic region# Target prediction with RNAhybrid
25543 + 21627 90 20 -29.8 NP_957931 5' arm      3' arm
25544 + 22530 89 19.5 -25.3 NP_957931 5' arm      3' arm
25545 + 22663 88 21.5 -24 NP_957931 5' arm      3' arm
25546 + 22988 86 21 -24.9 NP_957931 5' arm      3' arm
25547 + 23074 90 20 -21.5 NP_957931 5' arm      3' arm
25548 + 23614 88 21.5 -24.22 NP_957932 5' arm      3' arm
25549 + 25173 88 20.5 -24.2 NP_957934 5' arm      3' arm
25550 + 26267 90 20 -23.5 NP_957934 5' arm      3' arm
25551 + 26450 87 19.5 -26.8 NP_957934 5' arm      3' arm
25552 + 26554 90 22 -32.3 NP_957934 5' arm      3' arm
25553 + 26749 89 24.5 -23 NP_957934 5' arm      3' arm
25554 + 27288 83 21.5 -22.9 NP_957934 5' arm      3' arm
25555 + 28936 90 20.5 -21.6 NP_957937 5' arm      3' arm
25556 + 29314 88 20 -19.6 NP_957937 5' arm      3' arm
25557 + 29881 90 20.5 -23.5 NP_957937 5' arm      3' arm
25558 + 30908 90 19 -22.3 NP_957938 5' arm      3' arm
25559 + 31497 89 19 -20.9 NP_957938 5' arm      3' arm
25560 + 32019 90 20.5 -23.9 NP_957938 5' arm      3' arm
25561 + 32510 90 21.5 -27.2 NP_957938 5' arm      3' arm
25562 + 32709 89 19 -21.3 NP_957938 5' arm      3' arm
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# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.