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| GenBank Identifier | RefSeq Acc. | Name |
| 41057437 | NC_005337.1 | Bovine papular stomatitis virus |
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| ID | strand | start position | length | sRNA loop score |
core MFE.
|
NP ORF | Known viral miRNA | Match to own genomic region# | Target prediction with RNAhybrid |
| 25906 | - | 93686 | 90 | 21.5 | -29.9 | NP_957997 | 5' arm 3' arm | ||
| 25623 | + | 66149 | 90 | 22 | -29.9 | NP_957973 | 5' arm 3' arm | ||
| 25543 | + | 21627 | 90 | 20 | -29.8 | NP_957931 | 5' arm 3' arm | ||
| 25649 | + | 81743 | 88 | 21.5 | -29.8 | NP_957988 | 5' arm 3' arm | ||
| 25727 | + | 125403 | 89 | 22 | -29.8 | NP_958034 | 5' arm 3' arm | ||
| 25750 | - | 7176 | 90 | 21 | -29.7 | NP_957917 | 5' arm 3' arm | ||
| 25604 | + | 57657 | 90 | 21 | -29.5 | NP_957965 | 5' arm 3' arm | ||
| 25968 | - | 133054 | 89 | 24 | -29.3 | NP_958040 | 5' arm 3' arm | ||
| 25664 | + | 87775 | 88 | 19 | -29.2 | NP_957992 | 5' arm 3' arm | ||
| 25594 | + | 47979 | 87 | 20.5 | -29.2 | NP_957955 | 5' arm 3' arm | ||
| 25590 | + | 45790 | 90 | 22 | -29.2 | NP_957953 | 5' arm 3' arm | ||
| 25635 | + | 76895 | 88 | 22 | -29.2 | NP_957981 | 5' arm 3' arm | ||
| 25697 | + | 108670 | 90 | 20.5 | -29.1 | NP_958013 | 5' arm 3' arm | ||
| 25771 | - | 21767 | 85 | 21 | -29 | NP_957931 | 5' arm 3' arm | ||
| 25807 | - | 39334 | 90 | 21 | -28.9 | NP_957945 | 5' arm 3' arm | ||
| 25834 | - | 51590 | 86 | 20.5 | -28.9 | NP_957960 | 5' arm 3' arm | ||
| 25530 | + | 15701 | 84 | 19.5 | -28.9 | NP_957925 | 5' arm 3' arm | ||
| 25720 | + | 123195 | 86 | 25 | -28.9 | NP_958032 | 5' arm 3' arm | ||
| 25733 | + | 129415 | 87 | 24.5 | -28.8 | NP_958037 | 5' arm 3' arm | ||
| 25910 | - | 97041 | 90 | 20.5 | -28.7 | NP_958004 | 5' arm 3' arm |
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# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.
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