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| GenBank Identifier | RefSeq Acc. | Name |
| 41057437 | NC_005337.1 | Bovine papular stomatitis virus |
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| ID | strand | start position | length | sRNA loop score | core MFE. | NP ORF |
Known viral miRNA
|
Match to own genomic region# | Target prediction with RNAhybrid |
| 25506 | + | 2822 | 89 | 19 | -19.8 | NP_957913 | 5' arm 3' arm | ||
| 25504 | + | 1541 | 88 | 20.5 | -21 | NP_957912 | 5' arm 3' arm | ||
| 25507 | + | 3095 | 88 | 21 | -25.7 | NP_957913 | 5' arm 3' arm | ||
| 25503 | + | 44 | 90 | 21 | -26.7 | 5' arm 3' arm | |||
| 25505 | + | 1901 | 87 | 21.5 | -23.2 | NP_957912 | 5' arm 3' arm | ||
| 25515 | + | 8380 | 90 | 19.5 | -21.2 | NP_957918 | 5' arm 3' arm | ||
| 25520 | + | 10888 | 90 | 23 | -26.8 | NP_957919 | 5' arm 3' arm | ||
| 25530 | + | 15701 | 84 | 19.5 | -28.9 | NP_957925 | 5' arm 3' arm | ||
| 25529 | + | 15560 | 84 | 19.5 | -21.6 | NP_957925 | 5' arm 3' arm | ||
| 25526 | + | 14945 | 88 | 20 | -21.1 | NP_957924 | 5' arm 3' arm | ||
| 25532 | + | 16761 | 89 | 20.5 | -22 | NP_957927 | 5' arm 3' arm | ||
| 25527 | + | 15047 | 87 | 21 | -26.9 | NP_957924 | 5' arm 3' arm | ||
| 25528 | + | 15321 | 90 | 22 | -31.4 | NP_957925 | 5' arm 3' arm | ||
| 25523 | + | 13506 | 89 | 19 | -22.7 | NP_957924 | 5' arm 3' arm | ||
| 25519 | + | 10793 | 90 | 19 | -21.81 | NP_957919 | 5' arm 3' arm | ||
| 25518 | + | 10179 | 89 | 19.5 | -21.9 | NP_957919 | 5' arm 3' arm | ||
| 25522 | + | 12941 | 90 | 20 | -19.5 | NP_957922 | 5' arm 3' arm | ||
| 25525 | + | 13756 | 89 | 20.5 | -22.8 | NP_957924 | 5' arm 3' arm | ||
| 25521 | + | 11462 | 89 | 21.5 | -26 | NP_957920 | 5' arm 3' arm | ||
| 25524 | + | 13613 | 86 | 22 | -31.6 | NP_957924 | 5' arm 3' arm |
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# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.
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