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| GenBank Identifier | RefSeq Acc. | Name |
| 41057437 | NC_005337.1 | Bovine papular stomatitis virus |
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| ID | strand | start position | length | sRNA loop score |
core MFE.
|
NP ORF | Known viral miRNA | Match to own genomic region# | Target prediction with RNAhybrid |
| 25902 | - | 91911 | 82 | 20 | -32 | NP_957995 | 5' arm 3' arm | ||
| 25866 | - | 67747 | 87 | 21.5 | -31.8 | NP_957974 | 5' arm 3' arm | ||
| 25524 | + | 13613 | 86 | 22 | -31.6 | NP_957924 | 5' arm 3' arm | ||
| 25920 | - | 103560 | 90 | 20 | -31.4 | NP_958010 | 5' arm 3' arm | ||
| 25528 | + | 15321 | 90 | 22 | -31.4 | NP_957925 | 5' arm 3' arm | ||
| 25693 | + | 104939 | 89 | 19 | -31.4 | NP_958010 | 5' arm 3' arm | ||
| 25872 | - | 70993 | 87 | 22 | -31.3 | NP_957977 | 5' arm 3' arm | ||
| 25717 | + | 121400 | 89 | 21 | -31.2 | NP_958031 | 5' arm 3' arm | ||
| 25789 | - | 27197 | 85 | 21 | -31.1 | NP_957934 | 5' arm 3' arm | ||
| 25512 | + | 7285 | 90 | 24.5 | -31 | NP_957917 | 5' arm 3' arm | ||
| 25738 | + | 131343 | 87 | 19 | -31 | NP_958038 | 5' arm 3' arm | ||
| 25929 | - | 110137 | 90 | 22 | -31 | NP_958015 | 5' arm 3' arm | ||
| 25621 | + | 65889 | 88 | 20.5 | -30.9 | NP_957973 | 5' arm 3' arm | ||
| 25886 | - | 81390 | 80 | 23.5 | -30.8 | NP_957986 | 5' arm 3' arm | ||
| 25568 | + | 35211 | 83 | 25.5 | -30.7 | NP_957941 | 5' arm 3' arm | ||
| 25849 | - | 59513 | 89 | 23 | -30.6 | NP_957968 | 5' arm 3' arm | ||
| 25591 | + | 46174 | 88 | 21.5 | -30.4 | NP_957953 | 5' arm 3' arm | ||
| 25954 | - | 124723 | 89 | 23.5 | -30.2 | NP_958033 | 5' arm 3' arm | ||
| 25724 | + | 124311 | 89 | 19 | -30 | NP_958032 | 5' arm 3' arm | ||
| 25612 | + | 61707 | 89 | 19.5 | -30 | NP_957969 | 5' arm 3' arm |
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# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.
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