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| GenBank Identifier | RefSeq Acc. | Name |
| 41057437 | NC_005337.1 | Bovine papular stomatitis virus |
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| ID | strand | start position | length | sRNA loop score |
core MFE.
|
NP ORF | Known viral miRNA | Match to own genomic region# | Target prediction with RNAhybrid |
| 25897 | - | 88492 | 86 | 22 | -36.4 | NP_957993 | 5' arm 3' arm | ||
| 25951 | - | 123278 | 82 | 20.5 | -35.9 | NP_958032 | 5' arm 3' arm | ||
| 25675 | + | 91828 | 87 | 22.5 | -35.8 | NP_957995 | 5' arm 3' arm | ||
| 25684 | + | 96875 | 90 | 22.5 | -34.6 | NP_958004 | 5' arm 3' arm | ||
| 25939 | - | 117158 | 90 | 19.5 | -34.3 | 5' arm 3' arm | |||
| 25792 | - | 28349 | 90 | 21.5 | -33.8 | NP_957936 | 5' arm 3' arm | ||
| 25883 | - | 76201 | 90 | 20.5 | -33.5 | NP_957981 | 5' arm 3' arm | ||
| 25735 | + | 130195 | 90 | 25.5 | -33.4 | NP_958037 | 5' arm 3' arm | ||
| 25579 | + | 39947 | 90 | 23 | -33.3 | NP_957945 | 5' arm 3' arm | ||
| 25701 | + | 110054 | 81 | 21.5 | -33 | NP_958015 | 5' arm 3' arm | ||
| 25695 | + | 105414 | 89 | 22.5 | -33 | NP_958011 | 5' arm 3' arm | ||
| 25794 | - | 30644 | 83 | 19 | -32.9 | NP_957937 | 5' arm 3' arm | ||
| 25877 | - | 71982 | 90 | 22 | -32.8 | NP_957978 | 5' arm 3' arm | ||
| 25661 | + | 86489 | 87 | 21.5 | -32.7 | NP_957992 | 5' arm 3' arm | ||
| 25914 | - | 98576 | 89 | 20 | -32.5 | NP_958006 | 5' arm 3' arm | ||
| 25552 | + | 26554 | 90 | 22 | -32.3 | NP_957934 | 5' arm 3' arm | ||
| 25924 | - | 105062 | 88 | 21.5 | -32.2 | NP_958010 | 5' arm 3' arm | ||
| 25711 | + | 117952 | 88 | 23.5 | -32.2 | 5' arm 3' arm | |||
| 25762 | - | 15936 | 90 | 19 | -32.1 | NP_957925 | 5' arm 3' arm | ||
| 25902 | - | 91911 | 82 | 20 | -32 | NP_957995 | 5' arm 3' arm |
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# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.
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