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| GenBank Identifier | RefSeq Acc. | Name |
| 41057437 | NC_005337.1 | Bovine papular stomatitis virus |
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| ID | strand | start position | length | sRNA loop score |
core MFE.
|
NP ORF | Known viral miRNA | Match to own genomic region# | Target prediction with RNAhybrid |
| 25871 | - | 70792 | 89 | 20.5 | -19.4 | NP_957977 | 5' arm 3' arm | ||
| 25563 | + | 33459 | 82 | 20.5 | -19.4 | NP_957939 | 5' arm 3' arm | ||
| 25593 | + | 46742 | 90 | 22.5 | -19.4 | NP_957954 | 5' arm 3' arm | ||
| 25517 | + | 9393 | 90 | 20 | -19.4 | NP_957919 | 5' arm 3' arm | ||
| 25638 | + | 78272 | 87 | 19 | -19.4 | NP_957983 | 5' arm 3' arm | ||
| 25522 | + | 12941 | 90 | 20 | -19.5 | NP_957922 | 5' arm 3' arm | ||
| 25881 | - | 75202 | 86 | 20 | -19.5 | NP_957981 | 5' arm 3' arm | ||
| 25687 | + | 97843 | 90 | 19 | -19.5 | NP_958004 | 5' arm 3' arm | ||
| 25869 | - | 69962 | 89 | 21 | -19.5 | NP_957977 | 5' arm 3' arm | ||
| 25875 | - | 71350 | 89 | 21.5 | -19.5 | NP_957977 | 5' arm 3' arm | ||
| 25577 | + | 39441 | 90 | 20 | -19.52 | NP_957945 | 5' arm 3' arm | ||
| 25721 | + | 123284 | 89 | 21 | -19.6 | NP_958032 | 5' arm 3' arm | ||
| 25556 | + | 29314 | 88 | 20 | -19.6 | NP_957937 | 5' arm 3' arm | ||
| 25588 | + | 45000 | 83 | 21 | -19.6 | NP_957952 | 5' arm 3' arm | ||
| 25580 | + | 40086 | 90 | 21 | -19.6 | NP_957945 | 5' arm 3' arm | ||
| 25776 | - | 23166 | 90 | 19 | -19.7 | NP_957931 | 5' arm 3' arm | ||
| 25816 | - | 43771 | 89 | 19.5 | -19.7 | NP_957950 | 5' arm 3' arm | ||
| 25843 | - | 57839 | 90 | 19.5 | -19.7 | NP_957965 | 5' arm 3' arm | ||
| 25669 | + | 90163 | 89 | 24 | -19.7 | NP_957995 | 5' arm 3' arm | ||
| 25915 | - | 99490 | 89 | 19.5 | -19.7 | NP_958007 | 5' arm 3' arm |
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# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.
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