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| GenBank Identifier | RefSeq Acc. | Name |
| 41057437 | NC_005337.1 | Bovine papular stomatitis virus |
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| ID | strand | start position | length | sRNA loop score |
core MFE.
|
NP ORF | Known viral miRNA | Match to own genomic region# | Target prediction with RNAhybrid |
| 25602 | + | 56101 | 90 | 23.5 | -19.8 | NP_957965 | 5' arm 3' arm | ||
| 25959 | - | 126341 | 88 | 22 | -19.8 | NP_958034 | 5' arm 3' arm | ||
| 25708 | + | 115472 | 90 | 20 | -19.8 | NP_958023 | 5' arm 3' arm | ||
| 25506 | + | 2822 | 89 | 19 | -19.8 | NP_957913 | 5' arm 3' arm | ||
| 25573 | + | 36680 | 89 | 19 | -19.8 | NP_957943 | 5' arm 3' arm | ||
| 25746 | - | 3744 | 89 | 22 | -19.9 | NP_957913 | 5' arm 3' arm | ||
| 25761 | - | 15707 | 90 | 19 | -19.9 | NP_957925 | 5' arm 3' arm | ||
| 25922 | - | 103977 | 87 | 22 | -19.9 | NP_958010 | 5' arm 3' arm | ||
| 25581 | + | 40583 | 89 | 22.5 | -19.9 | NP_957946 | 5' arm 3' arm | ||
| 25575 | + | 37472 | 87 | 20 | -19.9 | NP_957944 | 5' arm 3' arm | ||
| 25861 | - | 66424 | 88 | 19.5 | -19.9 | NP_957973 | 5' arm 3' arm | ||
| 25742 | + | 133210 | 89 | 21 | -19.9 | NP_958040 | 5' arm 3' arm | ||
| 25534 | + | 18588 | 90 | 25.5 | -19.9 | NP_957928 | 5' arm 3' arm | ||
| 25935 | - | 115308 | 90 | 22 | -19.9 | NP_958023 | 5' arm 3' arm | ||
| 25653 | + | 82709 | 87 | 20 | -19.9 | NP_957988 | 5' arm 3' arm | ||
| 25783 | - | 24913 | 87 | 19 | -20 | 5' arm 3' arm | |||
| 25564 | + | 33545 | 86 | 20.5 | -20.1 | NP_957939 | 5' arm 3' arm | ||
| 25913 | - | 97959 | 89 | 20.5 | -20.1 | NP_958004 | 5' arm 3' arm | ||
| 25842 | - | 57707 | 87 | 21 | -20.1 | NP_957965 | 5' arm 3' arm | ||
| 25603 | + | 56617 | 89 | 20 | -20.1 | NP_957965 | 5' arm 3' arm |
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# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.
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