miRNA display CGI


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GenBank Identifier RefSeq Acc. Name
41057437 NC_005337.1 Bovine papular stomatitis virus

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ID strand start position length sRNA loop score core MFE. NP ORF Known viral miRNA Match to own genomic region# Target prediction with RNAhybrid
25638 + 78272 87 19 -19.4 NP_957983 5' arm      3' arm
25542 + 21192 89 19 -25.6 NP_957930 5' arm      3' arm
25509 + 3860 89 19 -21.3 NP_957913 5' arm      3' arm
25506 + 2822 89 19 -19.8 NP_957913 5' arm      3' arm
25942 - 118324 86 19 -24.9 5' arm      3' arm
25664 + 87775 88 19 -29.2 NP_957992 5' arm      3' arm
25562 + 32709 89 19 -21.3 NP_957938 5' arm      3' arm
25558 + 30908 90 19 -22.3 NP_957938 5' arm      3' arm
25617 + 63712 88 19 -27.3 5' arm      3' arm
25909 - 96084 87 19 -25.3 NP_958002 5' arm      3' arm
25937 - 115800 86 19 -26.8 NP_958023 5' arm      3' arm
25724 + 124311 89 19 -30 NP_958032 5' arm      3' arm
25958 - 126070 90 19 -25.8 NP_958034 5' arm      3' arm
25559 + 31497 89 19 -20.9 NP_957938 5' arm      3' arm
25705 + 115020 87 19 -27.3 NP_958023 5' arm      3' arm
25723 + 123994 90 19 -23.1 NP_958032 5' arm      3' arm
25891 - 85570 90 19 -22 NP_957991 5' arm      3' arm
25667 + 89931 85 19 -22.3 NP_957995 5' arm      3' arm
25900 - 90870 84 19 -20.3 NP_957995 5' arm      3' arm
25659 + 84898 90 19 -22.2 NP_957990 5' arm      3' arm
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# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.