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| GenBank Identifier | RefSeq Acc. | Name |
| 41057437 | NC_005337.1 | Bovine papular stomatitis virus |
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| ID | strand | start position | length | sRNA loop score | core MFE. |
NP ORF
|
Known viral miRNA | Match to own genomic region# | Target prediction with RNAhybrid |
| 25748 | - | 6214 | 87 | 20 | -20.6 | NP_957917 | 5' arm 3' arm | ||
| 25510 | + | 6822 | 86 | 21.5 | -28.1 | NP_957917 | 5' arm 3' arm | ||
| 25511 | + | 7054 | 90 | 24 | -28 | NP_957917 | 5' arm 3' arm | ||
| 25512 | + | 7285 | 90 | 24.5 | -31 | NP_957917 | 5' arm 3' arm | ||
| 25749 | - | 6824 | 88 | 20.5 | -21.6 | NP_957917 | 5' arm 3' arm | ||
| 25516 | + | 8980 | 84 | 21.5 | -24.2 | NP_957918 | 5' arm 3' arm | ||
| 25513 | + | 7731 | 84 | 20.5 | -20.3 | NP_957918 | 5' arm 3' arm | ||
| 25752 | - | 8165 | 88 | 22 | -20.6 | NP_957918 | 5' arm 3' arm | ||
| 25753 | - | 8827 | 85 | 19 | -21.2 | NP_957918 | 5' arm 3' arm | ||
| 25515 | + | 8380 | 90 | 19.5 | -21.2 | NP_957918 | 5' arm 3' arm | ||
| 25514 | + | 7970 | 90 | 20.5 | -22.6 | NP_957918 | 5' arm 3' arm | ||
| 25520 | + | 10888 | 90 | 23 | -26.8 | NP_957919 | 5' arm 3' arm | ||
| 25518 | + | 10179 | 89 | 19.5 | -21.9 | NP_957919 | 5' arm 3' arm | ||
| 25517 | + | 9393 | 90 | 20 | -19.4 | NP_957919 | 5' arm 3' arm | ||
| 25519 | + | 10793 | 90 | 19 | -21.81 | NP_957919 | 5' arm 3' arm | ||
| 25754 | - | 10331 | 89 | 19.5 | -23.3 | NP_957919 | 5' arm 3' arm | ||
| 25757 | - | 12151 | 90 | 19.5 | -22.7 | NP_957920 | 5' arm 3' arm | ||
| 25755 | - | 11551 | 88 | 23 | -27.3 | NP_957920 | 5' arm 3' arm | ||
| 25758 | - | 12255 | 90 | 21.5 | -23.1 | NP_957920 | 5' arm 3' arm | ||
| 25756 | - | 11685 | 89 | 19 | -20.7 | NP_957920 | 5' arm 3' arm |
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# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.
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