miRNA display CGI


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GenBank Identifier RefSeq Acc. Name
41057437 NC_005337.1 Bovine papular stomatitis virus

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ID strand start position length sRNA loop score core MFE. NP ORF Known viral miRNA Match to own genomic region# Target prediction with RNAhybrid
25942 - 118324 86 19 -24.9 5' arm      3' arm
25711 + 117952 88 23.5 -32.2 5' arm      3' arm
25617 + 63712 88 19 -27.3 5' arm      3' arm
25712 + 118185 90 20.5 -25 5' arm      3' arm
25797 - 33366 87 21.5 -21.3 5' arm      3' arm
25939 - 117158 90 19.5 -34.3 5' arm      3' arm
25969 - 134388 90 21 -26.7 5' arm      3' arm
25783 - 24913 87 19 -20 5' arm      3' arm
25503 + 44 90 21 -26.7 5' arm      3' arm
25505 + 1901 87 21.5 -23.2 NP_957912 5' arm      3' arm
25745 - 2236 89 21.5 -23.22 NP_957912 5' arm      3' arm
25504 + 1541 88 20.5 -21 NP_957912 5' arm      3' arm
25508 + 3436 86 22 -23 NP_957913 5' arm      3' arm
25507 + 3095 88 21 -25.7 NP_957913 5' arm      3' arm
25506 + 2822 89 19 -19.8 NP_957913 5' arm      3' arm
25747 - 4168 85 19 -25.2 NP_957913 5' arm      3' arm
25509 + 3860 89 19 -21.3 NP_957913 5' arm      3' arm
25746 - 3744 89 22 -19.9 NP_957913 5' arm      3' arm
25750 - 7176 90 21 -29.7 NP_957917 5' arm      3' arm
25510 + 6822 86 21.5 -28.1 NP_957917 5' arm      3' arm
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* Note: Click the field header to sort on a field. Click it again to reverse the sorted list.
# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.