miRNA display CGI


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GenBank Identifier RefSeq Acc. Name
41057437 NC_005337.1 Bovine papular stomatitis virus

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ID strand start position length sRNA loop score core MFE. NP ORF Known viral miRNA Match to own genomic region# Target prediction with RNAhybrid
25743 + 133868 87 20 -20.3 NP_958041 5' arm      3' arm
25744 - 564 87 20 -20.3 NP_958041 5' arm      3' arm
25968 - 133054 89 24 -29.3 NP_958040 5' arm      3' arm
25742 + 133210 89 21 -19.9 NP_958040 5' arm      3' arm
25741 + 132268 87 19.5 -25.9 NP_958039 5' arm      3' arm
25967 - 132623 89 19.5 -27.7 NP_958039 5' arm      3' arm
25964 - 130932 90 19.5 -27.1 NP_958038 5' arm      3' arm
25965 - 131056 89 22.5 -23.2 NP_958038 5' arm      3' arm
25737 + 130845 90 24 -27 NP_958038 5' arm      3' arm
25738 + 131343 87 19 -31 NP_958038 5' arm      3' arm
25966 - 132007 87 21 -21 NP_958038 5' arm      3' arm
25740 + 131973 90 20 -23.1 NP_958038 5' arm      3' arm
25739 + 131772 89 19.5 -22.8 NP_958038 5' arm      3' arm
25732 + 129142 88 21 -23.9 NP_958037 5' arm      3' arm
25733 + 129415 87 24.5 -28.8 NP_958037 5' arm      3' arm
25734 + 129926 90 19.5 -21.1 NP_958037 5' arm      3' arm
25963 - 130081 90 21 -27.2 NP_958037 5' arm      3' arm
25962 - 129959 89 20 -21.3 NP_958037 5' arm      3' arm
25736 + 130309 88 19.5 -23 NP_958037 5' arm      3' arm
25735 + 130195 90 25.5 -33.4 NP_958037 5' arm      3' arm
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# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.