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| GenBank Identifier | RefSeq Acc. | Name |
| 41057437 | NC_005337.1 | Bovine papular stomatitis virus |
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| ID | strand | start position | length | sRNA loop score | core MFE. |
NP ORF
|
Known viral miRNA | Match to own genomic region# | Target prediction with RNAhybrid |
| 25961 | - | 128811 | 90 | 20.5 | -26 | NP_958036 | 5' arm 3' arm | ||
| 25731 | + | 127289 | 90 | 19 | -26.4 | NP_958035 | 5' arm 3' arm | ||
| 25956 | - | 125470 | 88 | 20 | -22.5 | NP_958034 | 5' arm 3' arm | ||
| 25726 | + | 125196 | 85 | 19.5 | -25.2 | NP_958034 | 5' arm 3' arm | ||
| 25729 | + | 125800 | 90 | 20 | -21.6 | NP_958034 | 5' arm 3' arm | ||
| 25728 | + | 125673 | 88 | 21 | -22.3 | NP_958034 | 5' arm 3' arm | ||
| 25959 | - | 126341 | 88 | 22 | -19.8 | NP_958034 | 5' arm 3' arm | ||
| 25955 | - | 125323 | 89 | 22.5 | -22.6 | NP_958034 | 5' arm 3' arm | ||
| 25958 | - | 126070 | 90 | 19 | -25.8 | NP_958034 | 5' arm 3' arm | ||
| 25960 | - | 126484 | 90 | 21.5 | -20.2 | NP_958034 | 5' arm 3' arm | ||
| 25730 | + | 126476 | 82 | 21.5 | -27.6 | NP_958034 | 5' arm 3' arm | ||
| 25727 | + | 125403 | 89 | 22 | -29.8 | NP_958034 | 5' arm 3' arm | ||
| 25957 | - | 125871 | 86 | 20.5 | -27 | NP_958034 | 5' arm 3' arm | ||
| 25954 | - | 124723 | 89 | 23.5 | -30.2 | NP_958033 | 5' arm 3' arm | ||
| 25725 | + | 124891 | 90 | 20 | -21.8 | NP_958033 | 5' arm 3' arm | ||
| 25950 | - | 123173 | 90 | 22 | -26.8 | NP_958032 | 5' arm 3' arm | ||
| 25721 | + | 123284 | 89 | 21 | -19.6 | NP_958032 | 5' arm 3' arm | ||
| 25722 | + | 123399 | 84 | 21 | -28 | NP_958032 | 5' arm 3' arm | ||
| 25720 | + | 123195 | 86 | 25 | -28.9 | NP_958032 | 5' arm 3' arm | ||
| 25723 | + | 123994 | 90 | 19 | -23.1 | NP_958032 | 5' arm 3' arm |
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# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.
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