miRNA display CGI

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ID	strand	start position	length	sRNA loop score	core MFE.	NP ORF	Known viral miRNA	Match to own genomic region#	Target prediction with RNAhybrid
13172	+	132881	86	20.5	-20.2			5' arm      3' arm
13229	-	85824	88	20.5	-26.9	NP_570802		5' arm      3' arm
13127	+	49732	90	21	-25.2	NP_570773		5' arm      3' arm
13093	+	209	90	21	-25.2			5' arm      3' arm
13200	-	18640	89	21	-22.7	NP_570752		5' arm      3' arm
13224	-	72011	89	21	-24.7	NP_598361		5' arm      3' arm
13243	-	106911	89	21	-26.5	NP_570812		5' arm      3' arm
13167	+	126151	89	21	-19.9	NP_570823		5' arm      3' arm
13246	-	107779	83	21	-28.7	NP_570813		5' arm      3' arm
13110	+	23541	90	21	-21.9	NP_598359		5' arm      3' arm
13209	-	30638	90	21	-20.7	NP_570759		5' arm      3' arm
13226	-	77721	88	21	-27.5	NP_570797		5' arm      3' arm
13105	+	18153	90	21	-21.8	NP_570751		5' arm      3' arm
13152	+	116797	90	21	-21.8			5' arm      3' arm
13134	+	69356	90	21	-20.9	NP_570791		5' arm      3' arm
13174	+	133077	90	21	-25.2			5' arm      3' arm
13132	+	63945	90	21	-22.4	NP_570786		5' arm      3' arm
13242	-	106014	84	21	-22.7	NP_570812		5' arm      3' arm
13220	-	62684	90	21	-20.17	NP_570785		5' arm      3' arm
13109	+	22155	89	21	-19.5			5' arm      3' arm

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* Note: Click the field header to sort on a field. Click it again to reverse the sorted list.
# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.

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