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| GenBank Identifier | RefSeq Acc. | Name |
| 18653809 | NC_003401.1 | Cercopithecine herpesvirus 17 |
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| ID | strand | start position | length |
sRNA loop score
|
core MFE. | NP ORF | Known viral miRNA | Match to own genomic region# | Target prediction with RNAhybrid |
| 13117 | + | 28675 | 90 | 20 | -19.6 | NP_570757 | 5' arm 3' arm | ||
| 13180 | - | 8770 | 89 | 20 | -21.4 | NP_570747 | 5' arm 3' arm | ||
| 13142 | + | 93464 | 90 | 20 | -20.9 | NP_570808 | 5' arm 3' arm | ||
| 13225 | - | 72633 | 85 | 20.5 | -19.5 | NP_570792 | 5' arm 3' arm | ||
| 13137 | + | 84045 | 88 | 20.5 | -23.4 | NP_570801 | 5' arm 3' arm | ||
| 13229 | - | 85824 | 88 | 20.5 | -26.9 | NP_570802 | 5' arm 3' arm | ||
| 13154 | + | 117575 | 81 | 20.5 | -20.2 | 5' arm 3' arm | |||
| 13151 | + | 116615 | 90 | 20.5 | -26.6 | 5' arm 3' arm | |||
| 13091 | + | 13 | 86 | 20.5 | -20.2 | 5' arm 3' arm | |||
| 13100 | + | 11091 | 82 | 20.5 | -20 | NP_570748 | 5' arm 3' arm | ||
| 13103 | + | 14849 | 87 | 20.5 | -22.7 | NP_570750 | 5' arm 3' arm | ||
| 13268 | - | 122600 | 86 | 20.5 | -26.4 | 5' arm 3' arm | |||
| 13271 | - | 126384 | 87 | 20.5 | -20.7 | NP_570823 | 5' arm 3' arm | ||
| 13212 | - | 41052 | 88 | 20.5 | -25.1 | NP_570765 | 5' arm 3' arm | ||
| 13217 | - | 48339 | 87 | 20.5 | -21.2 | NP_570772 | 5' arm 3' arm | ||
| 13115 | + | 28021 | 90 | 20.5 | -19.9 | NP_570757 | 5' arm 3' arm | ||
| 13192 | - | 14988 | 90 | 20.5 | -19.9 | NP_570750 | 5' arm 3' arm | ||
| 13172 | + | 132881 | 86 | 20.5 | -20.2 | 5' arm 3' arm | |||
| 13206 | - | 20942 | 88 | 20.5 | -28.8 | NP_570754 | 5' arm 3' arm | ||
| 13248 | - | 111524 | 89 | 20.5 | -29.02 | NP_570816 | 5' arm 3' arm |
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# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.
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