miRNA display CGI


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GenBank Identifier RefSeq Acc. Name
41179361 NC_005357.1 Bordetella phage BPP-1

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ID strand start position length sRNA loop score core MFE. NP ORF Known viral miRNA Match to own genomic region# Target prediction with RNAhybrid
26462 + 8231 84 20.5 -21.6 NP_958679 5' arm      3' arm
26461 + 7273 87 20.5 -24.5 NP_958679 5' arm      3' arm
26611 - 38127 83 20.5 -26.6 NP_958711 5' arm      3' arm
26565 - 20061 90 20.5 -22.2 NP_958687 5' arm      3' arm
26613 - 38816 88 20.5 -21 NP_958712 5' arm      3' arm
26523 + 30548 89 20.5 -23.3 NP_958700 5' arm      3' arm
26543 - 3090 90 20.5 -22.5 NP_958676 5' arm      3' arm
26510 + 22325 90 20.5 -21.3 NP_958690 5' arm      3' arm
26623 - 42322 87 20.5 -27.5 NP_958719 5' arm      3' arm
26485 + 16014 90 20.5 -23.6 NP_958682 5' arm      3' arm
26522 + 30380 89 20.5 -22 NP_958699 5' arm      3' arm
26532 + 37598 89 20.5 -25.4 NP_958711 5' arm      3' arm
26614 - 39056 88 20.5 -22.9 NP_958713 5' arm      3' arm
26475 + 13045 90 20.5 -21.3 NP_958680 5' arm      3' arm
26474 + 12797 89 20.5 -20.9 NP_958680 5' arm      3' arm
26470 + 11480 90 20.5 -28.5 NP_958679 5' arm      3' arm
26575 - 27357 86 20.5 -21.5 NP_958698 5' arm      3' arm
26466 + 9690 89 20.5 -24.3 NP_958679 5' arm      3' arm
26568 - 23571 87 20.5 -22.7 NP_958692 5' arm      3' arm
26507 + 21763 89 20.5 -21.1 NP_958690 5' arm      3' arm
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# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.