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| GenBank Identifier | RefSeq Acc. | Name |
| 9629267 | NC_001798.1 | Human herpesvirus 2 |
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| ID | strand | start position | length |
sRNA loop score
|
core MFE. | NP ORF | Known viral miRNA | Match to own genomic region# | Target prediction with RNAhybrid |
| 5400 | - | 54223 | 90 | 19.5 | -27.2 | NP_044497 | 5' arm 3' arm | ||
| 5502 | - | 141247 | 87 | 19.5 | -24.7 | NP_044536 | 5' arm 3' arm | ||
| 5206 | + | 69956 | 89 | 19.5 | -30.64 | NP_044503 | 5' arm 3' arm | ||
| 5227 | + | 83087 | 82 | 19.5 | -26.2 | NP_044507 | 5' arm 3' arm | ||
| 5398 | - | 51881 | 90 | 19.5 | -29.2 | NP_044495 | 5' arm 3' arm | ||
| 5103 | + | 3174 | 87 | 19.5 | -21.4 | NP_044469 | 5' arm 3' arm | ||
| 5142 | + | 27296 | 89 | 19.5 | -23.7 | NP_044482 | 5' arm 3' arm | ||
| 5319 | + | 147597 | 87 | 19.5 | -23.9 | NP_044542 | 5' arm 3' arm | ||
| 5445 | - | 97420 | 90 | 19.5 | -26.4 | NP_044514 | 5' arm 3' arm | ||
| 5485 | - | 124076 | 87 | 19.5 | -21.4 | NP_044528 | 5' arm 3' arm | ||
| 5250 | + | 96706 | 90 | 19.5 | -21.8 | 5' arm 3' arm | |||
| 5152 | + | 34054 | 88 | 19.5 | -22.9 | NP_044484 | 5' arm 3' arm | ||
| 5160 | + | 39647 | 89 | 19.5 | -21.4 | NP_044488 | 5' arm 3' arm | ||
| 5402 | - | 55029 | 87 | 19.5 | -20.6 | NP_044497 | 5' arm 3' arm | ||
| 5503 | - | 141518 | 85 | 19.5 | -22.4 | NP_044536 | 5' arm 3' arm | ||
| 5508 | - | 144578 | 90 | 19.5 | -23.9 | NP_044538 | 5' arm 3' arm | ||
| 5512 | - | 146564 | 90 | 19.5 | -23.9 | 5' arm 3' arm | |||
| 5417 | - | 69804 | 90 | 19.5 | -26.2 | NP_044503 | 5' arm 3' arm | ||
| 5146 | + | 29829 | 86 | 19.5 | -21.1 | NP_044484 | 5' arm 3' arm | ||
| 5144 | + | 28784 | 90 | 19.5 | -21.9 | NP_044483 | 5' arm 3' arm |
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# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.
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