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| GenBank Identifier | RefSeq Acc. | Name |
| 9629267 | NC_001798.1 | Human herpesvirus 2 |
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| ID | strand | start position | length | sRNA loop score |
core MFE.
|
NP ORF | Known viral miRNA | Match to own genomic region# | Target prediction with RNAhybrid |
| 5472 | - | 113279 | 90 | 19.5 | -28.1 | NP_044524 | 5' arm 3' arm | ||
| 5346 | - | 23653 | 90 | 20 | -28.1 | NP_044479 | 5' arm 3' arm | ||
| 5345 | - | 22751 | 88 | 20 | -28.1 | NP_044478 | 5' arm 3' arm | ||
| 5137 | + | 25428 | 88 | 19 | -28 | NP_044481 | 5' arm 3' arm | ||
| 5413 | - | 65704 | 89 | 20 | -28 | NP_044500 | 5' arm 3' arm | ||
| 5322 | + | 149372 | 87 | 20 | -27.9 | 5' arm 3' arm | |||
| 5487 | - | 132370 | 87 | 20 | -27.9 | 5' arm 3' arm | |||
| 5480 | - | 117893 | 89 | 24 | -27.9 | 5' arm 3' arm | |||
| 5171 | + | 46333 | 89 | 22.5 | -27.8 | NP_044491 | 5' arm 3' arm | ||
| 5251 | + | 96975 | 86 | 21.5 | -27.8 | NP_044514 | 5' arm 3' arm | ||
| 5386 | - | 45330 | 88 | 23 | -27.8 | NP_044491 | 5' arm 3' arm | ||
| 5350 | - | 24557 | 88 | 20.5 | -27.7 | NP_044479 | 5' arm 3' arm | ||
| 5209 | + | 72021 | 90 | 22 | -27.7 | NP_044506 | 5' arm 3' arm | ||
| 5140 | + | 26228 | 86 | 19 | -27.7 | NP_044481 | 5' arm 3' arm | ||
| 5468 | - | 110262 | 89 | 23 | -27.7 | NP_044523 | 5' arm 3' arm | ||
| 5218 | + | 77811 | 89 | 21 | -27.6 | NP_044506 | 5' arm 3' arm | ||
| 5328 | - | 6591 | 90 | 24 | -27.6 | 5' arm 3' arm | |||
| 5285 | + | 120659 | 90 | 24 | -27.6 | 5' arm 3' arm | |||
| 5147 | + | 30530 | 88 | 20 | -27.5 | NP_044485 | 5' arm 3' arm | ||
| 5200 | + | 65933 | 88 | 19 | -27.5 | NP_044500 | 5' arm 3' arm |
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# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.
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