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| GenBank Identifier | RefSeq Acc. | Name |
| 9629267 | NC_001798.1 | Human herpesvirus 2 |
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| ID | strand | start position | length | sRNA loop score |
core MFE.
|
NP ORF | Known viral miRNA | Match to own genomic region# | Target prediction with RNAhybrid |
| 5182 | + | 51183 | 90 | 21 | -28.9 | NP_044495 | 5' arm 3' arm | ||
| 5321 | + | 149001 | 82 | 26 | -28.8 | 5' arm 3' arm | |||
| 5488 | - | 132741 | 82 | 26 | -28.8 | 5' arm 3' arm | |||
| 5340 | - | 19450 | 89 | 22 | -28.7 | NP_044477 | 5' arm 3' arm | ||
| 5465 | - | 109338 | 89 | 23 | -28.7 | NP_044522 | 5' arm 3' arm | ||
| 5187 | + | 55136 | 89 | 23 | -28.7 | NP_044497 | 5' arm 3' arm | ||
| 5470 | - | 111195 | 90 | 21 | -28.7 | NP_044523 | 5' arm 3' arm | ||
| 5202 | + | 68053 | 89 | 19 | -28.62 | NP_044502 | 5' arm 3' arm | ||
| 5289 | + | 121817 | 90 | 22.5 | -28.6 | 5' arm 3' arm | |||
| 5418 | - | 70505 | 87 | 23.5 | -28.6 | NP_044504 | 5' arm 3' arm | ||
| 5324 | - | 5433 | 90 | 22.5 | -28.6 | 5' arm 3' arm | |||
| 5211 | + | 73807 | 88 | 20.5 | -28.6 | NP_044506 | 5' arm 3' arm | ||
| 5292 | + | 131644 | 89 | 22 | -28.5 | NP_044544 | 5' arm 3' arm | ||
| 5521 | - | 150098 | 89 | 22 | -28.5 | NP_044544 | 5' arm 3' arm | ||
| 5167 | + | 44646 | 90 | 20.5 | -28.5 | NP_044491 | 5' arm 3' arm | ||
| 5473 | - | 113386 | 90 | 19.5 | -28.5 | NP_044524 | 5' arm 3' arm | ||
| 5102 | + | 312 | 90 | 25.5 | -28.3 | 5' arm 3' arm | |||
| 5486 | - | 126938 | 90 | 25.5 | -28.3 | 5' arm 3' arm | |||
| 5116 | + | 12003 | 85 | 21 | -28.3 | NP_044473 | 5' arm 3' arm | ||
| 5383 | - | 44310 | 90 | 20.5 | -28.2 | NP_044491 | 5' arm 3' arm |
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# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.
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