miRNA display CGI

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ID	strand	start position	length	sRNA loop score	core MFE.	NP ORF	Known viral miRNA	Match to own genomic region#	Target prediction with RNAhybrid
5104	+	3570	89	23.5	-31.3			5' arm      3' arm
5131	+	20138	90	19	-27	NP_044477		5' arm      3' arm
5140	+	26228	86	19	-27.7	NP_044481		5' arm      3' arm
5138	+	25674	87	19	-25.1	NP_044481		5' arm      3' arm
5137	+	25428	88	19	-28	NP_044481		5' arm      3' arm
5133	+	23384	70	19	-36.2	NP_044479		5' arm      3' arm
5142	+	27296	89	19.5	-23.7	NP_044482		5' arm      3' arm
5135	+	24369	89	19.5	-23.9	NP_044479		5' arm      3' arm
5139	+	25784	89	22	-22	NP_044481		5' arm      3' arm
5136	+	25124	90	23.5	-22.4	NP_044481		5' arm      3' arm
5134	+	24002	90	24	-27	NP_044479		5' arm      3' arm
5102	+	312	90	25.5	-28.3			5' arm      3' arm
5132	+	20896	89	20.5	-20.7	NP_044478		5' arm      3' arm
5130	+	19996	87	21.5	-24.1	NP_044477		5' arm      3' arm
5129	+	19874	90	21.5	-24	NP_044477		5' arm      3' arm
5122	+	15348	80	19	-24.04	NP_044475		5' arm      3' arm
5121	+	14489	90	19	-21.7	NP_044474		5' arm      3' arm
5125	+	16884	88	19.5	-23.5	NP_044475		5' arm      3' arm
5124	+	16654	88	19.5	-23	NP_044475		5' arm      3' arm
5128	+	18183	89	20.5	-20.8			5' arm      3' arm

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* Note: Click the field header to sort on a field. Click it again to reverse the sorted list.
# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.

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