miRNA display CGI

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ID	strand	start position	length	sRNA loop score	core MFE.	NP ORF	Known viral miRNA	Match to own genomic region#	Target prediction with RNAhybrid
5141	+	27068	88	19	-21.1	NP_044482		5' arm      3' arm
5146	+	29829	86	19.5	-21.1	NP_044484		5' arm      3' arm
5177	+	49630	88	20.5	-21.1	NP_044494		5' arm      3' arm
5513	-	146813	90	20.5	-21.2	NP_044541		5' arm      3' arm
5330	-	7822	87	23	-21.2			5' arm      3' arm
5283	+	119428	87	23	-21.2			5' arm      3' arm
5466	-	109483	89	20	-21.2	NP_044522		5' arm      3' arm
5175	+	48859	90	19.5	-21.26			5' arm      3' arm
5449	-	99809	89	21	-21.3	NP_044516		5' arm      3' arm
5332	-	9900	86	19.5	-21.3	NP_044470		5' arm      3' arm
5490	-	133807	90	21.5	-21.3	NP_044531		5' arm      3' arm
5151	+	33903	87	19	-21.3	NP_044484		5' arm      3' arm
5365	-	33792	86	22.5	-21.4	NP_044484		5' arm      3' arm
5103	+	3174	87	19.5	-21.4	NP_044469		5' arm      3' arm
5373	-	39645	87	19	-21.4	NP_044488		5' arm      3' arm
5233	+	86357	87	22.5	-21.4	NP_044508		5' arm      3' arm
5160	+	39647	89	19.5	-21.4	NP_044488		5' arm      3' arm
5452	-	100902	90	24	-21.4	NP_044516		5' arm      3' arm
5442	-	94540	90	21	-21.4	NP_044512		5' arm      3' arm
5485	-	124076	87	19.5	-21.4	NP_044528		5' arm      3' arm

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* Note: Click the field header to sort on a field. Click it again to reverse the sorted list.
# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.

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