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| GenBank Identifier | RefSeq Acc. | Name |
| 9629267 | NC_001798.1 | Human herpesvirus 2 |
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| ID | strand | start position | length | sRNA loop score |
core MFE.
|
NP ORF | Known viral miRNA | Match to own genomic region# | Target prediction with RNAhybrid |
| 5115 | + | 11512 | 88 | 20 | -30 | NP_044472 | 5' arm 3' arm | ||
| 5255 | + | 98344 | 87 | 23 | -29.99 | NP_044514 | 5' arm 3' arm | ||
| 5259 | + | 100206 | 88 | 23.5 | -29.9 | NP_044516 | 5' arm 3' arm | ||
| 5253 | + | 97924 | 88 | 20 | -29.7 | NP_044514 | 5' arm 3' arm | ||
| 5123 | + | 15731 | 88 | 21.5 | -29.7 | NP_044475 | 5' arm 3' arm | ||
| 5462 | - | 106974 | 87 | 22 | -29.6 | NP_044519 | 5' arm 3' arm | ||
| 5303 | + | 136601 | 89 | 19 | -29.5 | NP_044533 | 5' arm 3' arm | ||
| 5310 | + | 140423 | 79 | 19 | -29.4 | NP_044535 | 5' arm 3' arm | ||
| 5307 | + | 138254 | 86 | 19 | -29.3 | NP_044534 | 5' arm 3' arm | ||
| 5382 | - | 44026 | 90 | 22.5 | -29.3 | 5' arm 3' arm | |||
| 5280 | + | 115486 | 75 | 21 | -29.2 | NP_044525 | 5' arm 3' arm | ||
| 5221 | + | 79645 | 86 | 22.5 | -29.2 | NP_044506 | 5' arm 3' arm | ||
| 5364 | - | 32404 | 88 | 21.5 | -29.2 | NP_044486 | 5' arm 3' arm | ||
| 5398 | - | 51881 | 90 | 19.5 | -29.2 | NP_044495 | 5' arm 3' arm | ||
| 5247 | + | 94199 | 87 | 22.5 | -29.2 | NP_044512 | 5' arm 3' arm | ||
| 5428 | - | 83288 | 87 | 20 | -29 | NP_044507 | 5' arm 3' arm | ||
| 5316 | + | 146015 | 90 | 20 | -29 | NP_044540 | 5' arm 3' arm | ||
| 5241 | + | 90265 | 88 | 20.5 | -29 | NP_044509 | 5' arm 3' arm | ||
| 5464 | - | 107773 | 89 | 19.5 | -29 | NP_044520 | 5' arm 3' arm | ||
| 5205 | + | 68939 | 90 | 21.5 | -28.9 | NP_044502 | 5' arm 3' arm |
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# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.
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