miRNA display CGI

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ID	strand	start position	length	sRNA loop score	core MFE.	NP ORF	Known viral miRNA	Match to own genomic region#	Target prediction with RNAhybrid
5199	+	65691	88	19	-22.8	NP_044500		5' arm      3' arm
5355	-	27494	84	19	-22.8	NP_044482		5' arm      3' arm
5220	+	79006	89	19	-22	NP_044506		5' arm      3' arm
5271	+	106522	90	19	-26.4	NP_044519		5' arm      3' arm
5239	+	89620	89	19	-19.9	NP_044509		5' arm      3' arm
5307	+	138254	86	19	-29.3	NP_044534		5' arm      3' arm
5516	-	148557	88	19	-21.5			5' arm      3' arm
5114	+	11336	89	19	-22.4	NP_044472		5' arm      3' arm
5118	+	12829	88	19	-26	NP_044474		5' arm      3' arm
5169	+	45459	89	19	-27.5	NP_044491		5' arm      3' arm
5406	-	60180	89	19	-33.5	NP_044499		5' arm      3' arm
5193	+	61525	89	19	-26.2	NP_044499		5' arm      3' arm
5397	-	51721	88	19	-25.2	NP_044495		5' arm      3' arm
5384	-	44409	88	19	-23.4	NP_044491		5' arm      3' arm
5391	-	49372	87	19	-24	NP_044494		5' arm      3' arm
5121	+	14489	90	19	-21.7	NP_044474		5' arm      3' arm
5122	+	15348	80	19	-24.04	NP_044475		5' arm      3' arm
5279	+	115365	88	19	-19.5	NP_044525		5' arm      3' arm
5244	+	92877	86	19	-31.3	NP_044511		5' arm      3' arm
5160	+	39647	89	19.5	-21.4	NP_044488		5' arm      3' arm

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* Note: Click the field header to sort on a field. Click it again to reverse the sorted list.
# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.

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