miRNA display CGI


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GenBank Identifier RefSeq Acc. Name
9629267 NC_001798.1 Human herpesvirus 2

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ID strand start position length sRNA loop score core MFE. NP ORF Known viral miRNA Match to own genomic region# Target prediction with RNAhybrid
5136 + 25124 90 23.5 -22.4 NP_044481 5' arm      3' arm
5415 - 66547 87 23.5 -22 NP_044500 5' arm      3' arm
5259 + 100206 88 23.5 -29.9 NP_044516 5' arm      3' arm
5418 - 70505 87 23.5 -28.6 NP_044504 5' arm      3' arm
5399 - 52521 90 23.5 -21.5 NP_044496 5' arm      3' arm
5270 + 106381 89 23 -27.3 NP_044519 5' arm      3' arm
5108 + 8906 86 23 -32.7 5' arm      3' arm
5494 - 135955 89 23 -24.7 NP_044532 5' arm      3' arm
5257 + 98982 90 23 -20.9 NP_044515 5' arm      3' arm
5385 - 45134 90 23 -26.5 NP_044491 5' arm      3' arm
5187 + 55136 89 23 -28.7 NP_044497 5' arm      3' arm
5379 - 41500 90 23 -21.1 NP_044489 5' arm      3' arm
5282 + 118792 88 23 -21.9 5' arm      3' arm
5483 - 121500 88 23 -21 5' arm      3' arm
5276 + 112392 90 23 -20.14 NP_044523 5' arm      3' arm
5460 - 105293 89 23 -20.3 NP_044518 5' arm      3' arm
5465 - 109338 89 23 -28.7 NP_044522 5' arm      3' arm
5255 + 98344 87 23 -29.99 NP_044514 5' arm      3' arm
5258 + 99430 90 23 -23.8 NP_044516 5' arm      3' arm
5283 + 119428 87 23 -21.2 5' arm      3' arm
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* Note: Click the field header to sort on a field. Click it again to reverse the sorted list.
# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.