miRNA display CGI


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GenBank Identifier RefSeq Acc. Name
9629267 NC_001798.1 Human herpesvirus 2

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ID strand start position length sRNA loop score core MFE. NP ORF Known viral miRNA Match to own genomic region# Target prediction with RNAhybrid
5471 - 112137 89 24.5 -23.4 NP_044523 5' arm      3' arm
5291 + 131519 90 24 -23 NP_044530 5' arm      3' arm
5368 - 35001 90 24 -19.4 5' arm      3' arm
5232 + 86262 90 24 -30 NP_044508 5' arm      3' arm
5134 + 24002 90 24 -27 NP_044479 5' arm      3' arm
5522 - 150223 90 24 -23 NP_044530 5' arm      3' arm
5405 - 59408 89 24 -25.5 5' arm      3' arm
5328 - 6591 90 24 -27.6 5' arm      3' arm
5240 + 90093 90 24 -33 NP_044509 5' arm      3' arm
5480 - 117893 89 24 -27.9 5' arm      3' arm
5452 - 100902 90 24 -21.4 NP_044516 5' arm      3' arm
5285 + 120659 90 24 -27.6 5' arm      3' arm
5299 + 134706 90 24 -31.6 NP_044531 5' arm      3' arm
5104 + 3570 89 23.5 -31.3 5' arm      3' arm
5415 - 66547 87 23.5 -22 NP_044500 5' arm      3' arm
5219 + 78789 86 23.5 -25.9 NP_044506 5' arm      3' arm
5484 - 123680 89 23.5 -31.3 5' arm      3' arm
5259 + 100206 88 23.5 -29.9 NP_044516 5' arm      3' arm
5399 - 52521 90 23.5 -21.5 NP_044496 5' arm      3' arm
5448 - 98229 88 23.5 -22 NP_044514 5' arm      3' arm
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* Note: Click the field header to sort on a field. Click it again to reverse the sorted list.
# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.