miRNA display CGI

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ID	strand	start position	length	sRNA loop score	core MFE.	NP ORF	Known viral miRNA	Match to own genomic region#	Target prediction with RNAhybrid
5429	-	85334	90	20	-31.5	NP_044508		5' arm      3' arm
5315	+	145252	90	19.5	-31.4	NP_044538		5' arm      3' arm
5298	+	134406	89	21	-31.4	NP_044531		5' arm      3' arm
5244	+	92877	86	19	-31.3	NP_044511		5' arm      3' arm
5484	-	123680	89	23.5	-31.3			5' arm      3' arm
5104	+	3570	89	23.5	-31.3			5' arm      3' arm
5252	+	97534	90	25.5	-31.3	NP_044514		5' arm      3' arm
5392	-	49529	88	21.5	-31.2	NP_044494		5' arm      3' arm
5312	+	143887	90	21	-31	NP_044538		5' arm      3' arm
5439	-	90352	88	21	-31	NP_044509		5' arm      3' arm
5273	+	106889	90	19.5	-30.9	NP_044519		5' arm      3' arm
5469	-	110746	89	22	-30.7	NP_044523		5' arm      3' arm
5206	+	69956	89	19.5	-30.64	NP_044503		5' arm      3' arm
5450	-	100461	88	19.5	-30.6	NP_044516		5' arm      3' arm
5507	-	144193	89	19	-30.2	NP_044538		5' arm      3' arm
5361	-	30301	90	21	-30.1	NP_044485		5' arm      3' arm
5419	-	70873	84	19.5	-30	NP_044504		5' arm      3' arm
5230	+	85327	89	20.5	-30	NP_044508		5' arm      3' arm
5232	+	86262	90	24	-30	NP_044508		5' arm      3' arm
5115	+	11512	88	20	-30	NP_044472		5' arm      3' arm

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* Note: Click the field header to sort on a field. Click it again to reverse the sorted list.
# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.

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