miRNA display CGI

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ID	strand	start position	length	sRNA loop score	core MFE.	NP ORF	Known viral miRNA	Match to own genomic region#	Target prediction with RNAhybrid
5133	+	23384	70	19	-36.2	NP_044479		5' arm      3' arm
5237	+	88317	90	21.5	-35.81	NP_044509		5' arm      3' arm
5422	-	74465	90	21	-35.7	NP_044506		5' arm      3' arm
5226	+	82907	85	20.5	-34.5	NP_044507		5' arm      3' arm
5294	+	132424	87	25.5	-33.9			5' arm      3' arm
5519	-	149318	87	25.5	-33.9			5' arm      3' arm
5406	-	60180	89	19	-33.5	NP_044499		5' arm      3' arm
5216	+	76776	86	21.5	-33.4	NP_044506		5' arm      3' arm
5435	-	88051	89	22	-33.3	NP_044509		5' arm      3' arm
5423	-	80323	88	22	-33.2	NP_044506		5' arm      3' arm
5240	+	90093	90	24	-33	NP_044509		5' arm      3' arm
5108	+	8906	86	23	-32.7			5' arm      3' arm
5518	-	148942	78	22.5	-32.5			5' arm      3' arm
5295	+	132800	78	22.5	-32.5			5' arm      3' arm
5242	+	91192	89	21.5	-32.2	NP_044510		5' arm      3' arm
5509	-	144898	89	20.5	-32.1	NP_044538		5' arm      3' arm
5267	+	103721	86	21	-32.1	NP_044517		5' arm      3' arm
5333	-	10855	88	21.5	-32	NP_044471		5' arm      3' arm
5127	+	17696	89	21	-31.8	NP_044476		5' arm      3' arm
5299	+	134706	90	24	-31.6	NP_044531		5' arm      3' arm

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* Note: Click the field header to sort on a field. Click it again to reverse the sorted list.
# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.

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