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GenBank Identifier | RefSeq Acc. | Name |
9629267 | NC_001798.1 | Human herpesvirus 2 |
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ID | strand | start position | length | sRNA loop score |
core MFE.![]() |
NP ORF | Known viral miRNA | Match to own genomic region# | Target prediction with RNAhybrid |
5133 | + | 23384 | 70 | 19 | -36.2 | NP_044479 | 5' arm 3' arm | ||
5237 | + | 88317 | 90 | 21.5 | -35.81 | NP_044509 | 5' arm 3' arm | ||
5422 | - | 74465 | 90 | 21 | -35.7 | NP_044506 | 5' arm 3' arm | ||
5226 | + | 82907 | 85 | 20.5 | -34.5 | NP_044507 | 5' arm 3' arm | ||
5294 | + | 132424 | 87 | 25.5 | -33.9 | 5' arm 3' arm | |||
5519 | - | 149318 | 87 | 25.5 | -33.9 | 5' arm 3' arm | |||
5406 | - | 60180 | 89 | 19 | -33.5 | NP_044499 | 5' arm 3' arm | ||
5216 | + | 76776 | 86 | 21.5 | -33.4 | NP_044506 | 5' arm 3' arm | ||
5435 | - | 88051 | 89 | 22 | -33.3 | NP_044509 | 5' arm 3' arm | ||
5423 | - | 80323 | 88 | 22 | -33.2 | NP_044506 | 5' arm 3' arm | ||
5240 | + | 90093 | 90 | 24 | -33 | NP_044509 | 5' arm 3' arm | ||
5108 | + | 8906 | 86 | 23 | -32.7 | 5' arm 3' arm | |||
5518 | - | 148942 | 78 | 22.5 | -32.5 | 5' arm 3' arm | |||
5295 | + | 132800 | 78 | 22.5 | -32.5 | 5' arm 3' arm | |||
5242 | + | 91192 | 89 | 21.5 | -32.2 | NP_044510 | 5' arm 3' arm | ||
5509 | - | 144898 | 89 | 20.5 | -32.1 | NP_044538 | 5' arm 3' arm | ||
5267 | + | 103721 | 86 | 21 | -32.1 | NP_044517 | 5' arm 3' arm | ||
5333 | - | 10855 | 88 | 21.5 | -32 | NP_044471 | 5' arm 3' arm | ||
5127 | + | 17696 | 89 | 21 | -31.8 | NP_044476 | 5' arm 3' arm | ||
5299 | + | 134706 | 90 | 24 | -31.6 | NP_044531 | 5' arm 3' arm |
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# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.
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