miRNA display CGI


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GenBank Identifier RefSeq Acc. Name
9629267 NC_001798.1 Human herpesvirus 2

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ID strand start position length sRNA loop score core MFE. NP ORF Known viral miRNA Match to own genomic region# Target prediction with RNAhybrid
5133 + 23384 70 19 -36.2 NP_044479 5' arm      3' arm
5237 + 88317 90 21.5 -35.81 NP_044509 5' arm      3' arm
5422 - 74465 90 21 -35.7 NP_044506 5' arm      3' arm
5226 + 82907 85 20.5 -34.5 NP_044507 5' arm      3' arm
5294 + 132424 87 25.5 -33.9 5' arm      3' arm
5519 - 149318 87 25.5 -33.9 5' arm      3' arm
5406 - 60180 89 19 -33.5 NP_044499 5' arm      3' arm
5216 + 76776 86 21.5 -33.4 NP_044506 5' arm      3' arm
5435 - 88051 89 22 -33.3 NP_044509 5' arm      3' arm
5423 - 80323 88 22 -33.2 NP_044506 5' arm      3' arm
5240 + 90093 90 24 -33 NP_044509 5' arm      3' arm
5108 + 8906 86 23 -32.7 5' arm      3' arm
5518 - 148942 78 22.5 -32.5 5' arm      3' arm
5295 + 132800 78 22.5 -32.5 5' arm      3' arm
5242 + 91192 89 21.5 -32.2 NP_044510 5' arm      3' arm
5509 - 144898 89 20.5 -32.1 NP_044538 5' arm      3' arm
5267 + 103721 86 21 -32.1 NP_044517 5' arm      3' arm
5333 - 10855 88 21.5 -32 NP_044471 5' arm      3' arm
5127 + 17696 89 21 -31.8 NP_044476 5' arm      3' arm
5299 + 134706 90 24 -31.6 NP_044531 5' arm      3' arm
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# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.