miRNA display CGI


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GenBank Identifier RefSeq Acc. Name
9629267 NC_001798.1 Human herpesvirus 2

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ID strand start position length sRNA loop score core MFE. NP ORF Known viral miRNA Match to own genomic region# Target prediction with RNAhybrid
5126 + 17505 87 21 -20.3 NP_044476 5' arm      3' arm
5112 + 10672 90 20.5 -24.2 NP_044471 5' arm      3' arm
5117 + 12433 89 20.5 -22.2 NP_044473 5' arm      3' arm
5115 + 11512 88 20 -30 NP_044472 5' arm      3' arm
5110 + 10376 88 19.5 -22.7 NP_044471 5' arm      3' arm
5111 + 10466 89 19.5 -20.4 NP_044471 5' arm      3' arm
5114 + 11336 89 19 -22.4 NP_044472 5' arm      3' arm
5118 + 12829 88 19 -26 NP_044474 5' arm      3' arm
5123 + 15731 88 21.5 -29.7 NP_044475 5' arm      3' arm
5119 + 13247 88 21 -20.6 NP_044474 5' arm      3' arm
5116 + 12003 85 21 -28.3 NP_044473 5' arm      3' arm
5109 + 9840 90 21 -23.86 NP_044470 5' arm      3' arm
5104 + 3570 89 23.5 -31.3 5' arm      3' arm
5103 + 3174 87 19.5 -21.4 NP_044469 5' arm      3' arm
5107 + 8371 88 29 -26.4 5' arm      3' arm
5105 + 5750 88 23 -21 5' arm      3' arm
5108 + 8906 86 23 -32.7 5' arm      3' arm
5106 + 5869 87 19 -26.4 5' arm      3' arm
5120 + 13860 90 23.5 -26.2 NP_044474 5' arm      3' arm
5113 + 10921 90 22 -22.2 NP_044471 5' arm      3' arm
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* Note: Click the field header to sort on a field. Click it again to reverse the sorted list.
# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.