miRNA display CGI


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GenBank Identifier RefSeq Acc. Name
9629267 NC_001798.1 Human herpesvirus 2

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ID strand start position length sRNA loop score core MFE. NP ORF Known viral miRNA Match to own genomic region# Target prediction with RNAhybrid
5102 + 312 90 25.5 -28.3 5' arm      3' arm
5263 + 101590 88 19 -24.5 5' arm      3' arm
5194 + 62415 90 21 -20.4 5' arm      3' arm
5234 + 86865 90 21.5 -21.5 5' arm      3' arm
5246 + 93545 90 20 -25.7 5' arm      3' arm
5245 + 93301 84 20 -21 5' arm      3' arm
5195 + 62691 89 20.5 -21.6 5' arm      3' arm
5155 + 36214 88 20.5 -19.8 5' arm      3' arm
5150 + 33510 85 22 -26.7 5' arm      3' arm
5175 + 48859 90 19.5 -21.26 5' arm      3' arm
5181 + 50900 90 19.5 -23.6 5' arm      3' arm
5287 + 120925 87 27 -19.9 5' arm      3' arm
5104 + 3570 89 23.5 -31.3 5' arm      3' arm
5323 - 402 90 28.5 -26.9 5' arm      3' arm
5107 + 8371 88 29 -26.4 5' arm      3' arm
5105 + 5750 88 23 -21 5' arm      3' arm
5108 + 8906 86 23 -32.7 5' arm      3' arm
5106 + 5869 87 19 -26.4 5' arm      3' arm
5153 + 34837 88 21.5 -20.6 5' arm      3' arm
5250 + 96706 90 19.5 -21.8 5' arm      3' arm
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# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.